Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 RAP2CP1-201ENST00000605103 478 ntBASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ATG4AQ8WYN0 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 CROCCP5-201ENST00000436658 830 ntBASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 AC124283.5-201ENST00000624661 1809 ntBASIC20.23■□□□□ 0.83
ATG4AQ8WYN0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 TFP1-202ENST00000475455 1573 ntBASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 AL049812.1-201ENST00000432563 2267 ntBASIC20.22■□□□□ 0.83
ATG4AQ8WYN0 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 AC026185.1-201ENST00000445748 174 ntBASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms