Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
RC3H1Q5TC82 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 PHB2-202ENST00000440277 996 ntTSL 5 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 CLEC4GP1-201ENST00000596555 870 ntBASIC24.73■■□□□ 1.55
RC3H1Q5TC82 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 NDUFV2-AS1-203ENST00000608008 779 ntBASIC24.73■■□□□ 1.55
RC3H1Q5TC82 AC069148.1-201ENST00000608741 768 ntBASIC24.73■■□□□ 1.55
RC3H1Q5TC82 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
RC3H1Q5TC82 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 LY6E-213ENST00000522528 606 ntTSL 3 BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC24.72■■□□□ 1.55
RC3H1Q5TC82 HYMAI.1-201ENST00000620949 238 ntBASIC24.72■■□□□ 1.55
RC3H1Q5TC82 BX119927.1-201ENST00000636596 1552 ntBASIC24.71■■□□□ 1.55
RC3H1Q5TC82 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
RC3H1Q5TC82 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
RC3H1Q5TC82 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
RC3H1Q5TC82 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC24.71■■□□□ 1.55
RC3H1Q5TC82 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC24.71■■□□□ 1.55
RC3H1Q5TC82 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC24.71■■□□□ 1.55
RC3H1Q5TC82 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC24.71■■□□□ 1.55
RC3H1Q5TC82 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC24.71■■□□□ 1.55
RC3H1Q5TC82 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
RC3H1Q5TC82 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.55
RC3H1Q5TC82 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC24.7■■□□□ 1.55
RC3H1Q5TC82 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
RC3H1Q5TC82 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.55
RC3H1Q5TC82 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
RC3H1Q5TC82 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC24.7■■□□□ 1.55
RC3H1Q5TC82 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 AP000523.1-201ENST00000398242 1049 ntBASIC24.7■■□□□ 1.54
RC3H1Q5TC82 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC24.7■■□□□ 1.54
RC3H1Q5TC82 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 NEK4P2-201ENST00000580004 1012 ntBASIC24.7■■□□□ 1.54
RC3H1Q5TC82 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC24.7■■□□□ 1.54
RC3H1Q5TC82 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 CD37-204ENST00000535669 1674 ntTSL 2 BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 SMG8-203ENST00000578922 2178 ntBASIC24.69■■□□□ 1.54
RC3H1Q5TC82 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 AP001271.2-201ENST00000624018 1556 ntBASIC24.69■■□□□ 1.54
RC3H1Q5TC82 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 VENTXP5-201ENST00000523979 775 ntBASIC24.69■■□□□ 1.54
RC3H1Q5TC82 ZNF444P1-201ENST00000559497 298 ntBASIC24.69■■□□□ 1.54
RC3H1Q5TC82 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 AC083849.1-201ENST00000615227 514 ntBASIC24.69■■□□□ 1.54
RC3H1Q5TC82 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC24.69■■□□□ 1.54
RC3H1Q5TC82 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
RC3H1Q5TC82 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
RC3H1Q5TC82 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
RC3H1Q5TC82 STARP1-201ENST00000397973 869 ntBASIC24.68■■□□□ 1.54
RC3H1Q5TC82 NT5C-210ENST00000582160 860 ntTSL 2 BASIC24.68■■□□□ 1.54
RC3H1Q5TC82 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
RC3H1Q5TC82 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC24.68■■□□□ 1.54
RC3H1Q5TC82 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC24.68■■□□□ 1.54
RC3H1Q5TC82 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
RC3H1Q5TC82 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
RC3H1Q5TC82 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
RC3H1Q5TC82 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms