Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.52■■□□□ 1.04
CLCN3P51790 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CLCN3P51790 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.52■■□□□ 1.04
CLCN3P51790 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.52■■□□□ 1.04
CLCN3P51790 AC112907.3-201ENST00000577781 2400 ntBASIC21.52■■□□□ 1.04
CLCN3P51790 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLCN3P51790 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.52■■□□□ 1.04
CLCN3P51790 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.52■■□□□ 1.04
CLCN3P51790 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.52■■□□□ 1.04
CLCN3P51790 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CLCN3P51790 RCC2P6-201ENST00000526625 1557 ntBASIC21.52■■□□□ 1.04
CLCN3P51790 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CLCN3P51790 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CLCN3P51790 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLCN3P51790 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLCN3P51790 LINC01465-201ENST00000408887 1940 ntBASIC21.51■■□□□ 1.03
CLCN3P51790 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.51■■□□□ 1.03
CLCN3P51790 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.51■■□□□ 1.03
CLCN3P51790 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CLCN3P51790 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLCN3P51790 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 AC008040.2-201ENST00000461049 708 ntBASIC21.51■■□□□ 1.03
CLCN3P51790 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.51■■□□□ 1.03
CLCN3P51790 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 AC145285.6-201ENST00000604632 637 ntBASIC21.51■■□□□ 1.03
CLCN3P51790 AC010947.1-201ENST00000623454 693 ntBASIC21.51■■□□□ 1.03
CLCN3P51790 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.51■■□□□ 1.03
CLCN3P51790 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CLCN3P51790 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.51■■□□□ 1.03
CLCN3P51790 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLCN3P51790 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CLCN3P51790 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CLCN3P51790 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.5■■□□□ 1.03
CLCN3P51790 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CLCN3P51790 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.5■■□□□ 1.03
CLCN3P51790 NAPSB-206ENST00000562112 1266 ntBASIC21.5■■□□□ 1.03
CLCN3P51790 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.5■■□□□ 1.03
CLCN3P51790 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CLCN3P51790 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.5■■□□□ 1.03
CLCN3P51790 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLCN3P51790 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCN3P51790 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCN3P51790 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CLCN3P51790 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCN3P51790 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCN3P51790 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.49■■□□□ 1.03
CLCN3P51790 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.49■■□□□ 1.03
CLCN3P51790 AC011298.2-201ENST00000617989 482 ntBASIC21.49■■□□□ 1.03
CLCN3P51790 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCN3P51790 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCN3P51790 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCN3P51790 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLCN3P51790 LINC01568-207ENST00000641790 1380 ntBASIC21.48■■□□□ 1.03
CLCN3P51790 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
CLCN3P51790 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCN3P51790 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLCN3P51790 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
CLCN3P51790 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CLCN3P51790 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCN3P51790 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCN3P51790 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CLCN3P51790 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
CLCN3P51790 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.48■■□□□ 1.03
CLCN3P51790 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.48■■□□□ 1.03
CLCN3P51790 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.48■■□□□ 1.03
CLCN3P51790 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.48■■□□□ 1.03
CLCN3P51790 AC097488.1-201ENST00000507834 756 ntBASIC21.48■■□□□ 1.03
CLCN3P51790 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.48■■□□□ 1.03
CLCN3P51790 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CLCN3P51790 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.48■■□□□ 1.03
CLCN3P51790 DGCR10-201ENST00000609839 495 ntBASIC21.48■■□□□ 1.03
CLCN3P51790 AC130371.2-201ENST00000619443 611 ntBASIC21.48■■□□□ 1.03
CLCN3P51790 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CLCN3P51790 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CLCN3P51790 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.48■■□□□ 1.03
CLCN3P51790 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.48■■□□□ 1.03
CLCN3P51790 TCF3P1-201ENST00000423021 1937 ntBASIC21.48■■□□□ 1.03
CLCN3P51790 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLCN3P51790 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.47■■□□□ 1.03
CLCN3P51790 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
CLCN3P51790 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms