Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.14■□□□□ 0.65
SHMT2P34897 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SHMT2P34897 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.14■□□□□ 0.65
SHMT2P34897 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SHMT2P34897 AC110285.5-201ENST00000611501 352 ntBASIC19.14■□□□□ 0.65
SHMT2P34897 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.14■□□□□ 0.65
SHMT2P34897 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.14■□□□□ 0.65
SHMT2P34897 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.14■□□□□ 0.65
SHMT2P34897 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SHMT2P34897 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHMT2P34897 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
SHMT2P34897 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHMT2P34897 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
SHMT2P34897 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHMT2P34897 TFP1-202ENST00000475455 1573 ntBASIC19.14■□□□□ 0.65
SHMT2P34897 AP001271.2-201ENST00000624018 1556 ntBASIC19.14■□□□□ 0.65
SHMT2P34897 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHMT2P34897 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHMT2P34897 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
SHMT2P34897 AC098818.2-201ENST00000564925 2320 ntBASIC19.13■□□□□ 0.65
SHMT2P34897 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.13■□□□□ 0.65
SHMT2P34897 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHMT2P34897 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.13■□□□□ 0.65
SHMT2P34897 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.13■□□□□ 0.65
SHMT2P34897 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.13■□□□□ 0.65
SHMT2P34897 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHMT2P34897 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.13■□□□□ 0.65
SHMT2P34897 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.13■□□□□ 0.65
SHMT2P34897 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.13■□□□□ 0.65
SHMT2P34897 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.13■□□□□ 0.65
SHMT2P34897 NBPF21P-201ENST00000425093 1451 ntBASIC19.13■□□□□ 0.65
SHMT2P34897 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHMT2P34897 AC018445.3-201ENST00000624177 1945 ntBASIC19.13■□□□□ 0.65
SHMT2P34897 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
SHMT2P34897 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHMT2P34897 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.13■□□□□ 0.65
SHMT2P34897 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHMT2P34897 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHMT2P34897 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHMT2P34897 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHMT2P34897 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHMT2P34897 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.12■□□□□ 0.65
SHMT2P34897 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 AP006587.1-201ENST00000534129 1502 ntBASIC19.12■□□□□ 0.65
SHMT2P34897 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.12■□□□□ 0.65
SHMT2P34897 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.12■□□□□ 0.65
SHMT2P34897 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SHMT2P34897 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.12■□□□□ 0.65
SHMT2P34897 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.12■□□□□ 0.65
SHMT2P34897 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SHMT2P34897 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.12■□□□□ 0.65
SHMT2P34897 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.12■□□□□ 0.65
SHMT2P34897 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.12■□□□□ 0.65
SHMT2P34897 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.12■□□□□ 0.65
SHMT2P34897 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SHMT2P34897 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.12■□□□□ 0.65
SHMT2P34897 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHMT2P34897 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.12■□□□□ 0.65
SHMT2P34897 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.11■□□□□ 0.65
SHMT2P34897 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHMT2P34897 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.11■□□□□ 0.65
SHMT2P34897 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHMT2P34897 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHMT2P34897 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHMT2P34897 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHMT2P34897 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
SHMT2P34897 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SHMT2P34897 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.11■□□□□ 0.65
SHMT2P34897 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SHMT2P34897 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHMT2P34897 AC116562.4-201ENST00000641316 2276 ntBASIC19.11■□□□□ 0.65
SHMT2P34897 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
SHMT2P34897 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.11■□□□□ 0.65
SHMT2P34897 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.11■□□□□ 0.65
SHMT2P34897 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
SHMT2P34897 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.11■□□□□ 0.65
SHMT2P34897 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.11■□□□□ 0.65
SHMT2P34897 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.11■□□□□ 0.65
SHMT2P34897 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.11■□□□□ 0.65
SHMT2P34897 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
SHMT2P34897 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHMT2P34897 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.11■□□□□ 0.65
SHMT2P34897 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHMT2P34897 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.11■□□□□ 0.65
SHMT2P34897 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHMT2P34897 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms