Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A1P20908 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A1P20908 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
COL5A1P20908 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
COL5A1P20908 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.84■□□□□ 0.61
COL5A1P20908 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
COL5A1P20908 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A1P20908 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.84■□□□□ 0.61
COL5A1P20908 AL353719.1-201ENST00000566847 864 ntBASIC18.84■□□□□ 0.61
COL5A1P20908 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.84■□□□□ 0.61
COL5A1P20908 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.84■□□□□ 0.61
COL5A1P20908 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.84■□□□□ 0.61
COL5A1P20908 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.84■□□□□ 0.61
COL5A1P20908 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.83■□□□□ 0.61
COL5A1P20908 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL5A1P20908 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.83■□□□□ 0.61
COL5A1P20908 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL5A1P20908 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL5A1P20908 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
COL5A1P20908 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A1P20908 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
COL5A1P20908 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A1P20908 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A1P20908 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.83■□□□□ 0.6
COL5A1P20908 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A1P20908 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A1P20908 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.83■□□□□ 0.6
COL5A1P20908 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.82■□□□□ 0.6
COL5A1P20908 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A1P20908 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A1P20908 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A1P20908 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.82■□□□□ 0.6
COL5A1P20908 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.82■□□□□ 0.6
COL5A1P20908 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.82■□□□□ 0.6
COL5A1P20908 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.82■□□□□ 0.6
COL5A1P20908 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.82■□□□□ 0.6
COL5A1P20908 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.82■□□□□ 0.6
COL5A1P20908 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.82■□□□□ 0.6
COL5A1P20908 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A1P20908 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.82■□□□□ 0.6
COL5A1P20908 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A1P20908 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A1P20908 AL137060.1-201ENST00000618151 2648 ntBASIC18.82■□□□□ 0.6
COL5A1P20908 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A1P20908 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A1P20908 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.81■□□□□ 0.6
COL5A1P20908 HOMER2P1-201ENST00000455653 964 ntBASIC18.81■□□□□ 0.6
COL5A1P20908 AL671277.2-201ENST00000458060 996 ntBASIC18.81■□□□□ 0.6
COL5A1P20908 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.81■□□□□ 0.6
COL5A1P20908 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A1P20908 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.81■□□□□ 0.6
COL5A1P20908 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
COL5A1P20908 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A1P20908 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A1P20908 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.81■□□□□ 0.6
COL5A1P20908 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A1P20908 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A1P20908 AC092720.2-201ENST00000602388 1665 ntBASIC18.81■□□□□ 0.6
COL5A1P20908 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A1P20908 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL5A1P20908 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.81■□□□□ 0.6
COL5A1P20908 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.81■□□□□ 0.6
COL5A1P20908 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.81■□□□□ 0.6
COL5A1P20908 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.81■□□□□ 0.6
COL5A1P20908 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL5A1P20908 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.8■□□□□ 0.6
COL5A1P20908 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A1P20908 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A1P20908 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A1P20908 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A1P20908 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.8■□□□□ 0.6
COL5A1P20908 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A1P20908 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
COL5A1P20908 AP003041.3-201ENST00000527151 707 ntBASIC18.8■□□□□ 0.6
COL5A1P20908 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
COL5A1P20908 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.8■□□□□ 0.6
COL5A1P20908 AC073314.1-201ENST00000568729 2216 ntBASIC18.8■□□□□ 0.6
COL5A1P20908 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
COL5A1P20908 AP001271.2-201ENST00000624018 1556 ntBASIC18.8■□□□□ 0.6
COL5A1P20908 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A1P20908 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A1P20908 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.8■□□□□ 0.6
COL5A1P20908 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.79■□□□□ 0.6
COL5A1P20908 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A1P20908 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A1P20908 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.79■□□□□ 0.6
COL5A1P20908 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.79■□□□□ 0.6
COL5A1P20908 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.79■□□□□ 0.6
COL5A1P20908 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.79■□□□□ 0.6
COL5A1P20908 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.79■□□□□ 0.6
COL5A1P20908 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A1P20908 AC011558.1-201ENST00000623459 338 ntBASIC18.79■□□□□ 0.6
COL5A1P20908 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A1P20908 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.79■□□□□ 0.6
COL5A1P20908 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.79■□□□□ 0.6
COL5A1P20908 IER3-202ENST00000376377 1350 ntBASIC18.79■□□□□ 0.6
COL5A1P20908 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.79■□□□□ 0.6
COL5A1P20908 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A1P20908 HCG4P8-203ENST00000443049 980 ntBASIC18.79■□□□□ 0.6
COL5A1P20908 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms