Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCANP13611 LINC01465-201ENST00000408887 1940 ntBASIC20.31■□□□□ 0.84
VCANP13611 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.31■□□□□ 0.84
VCANP13611 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCANP13611 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCANP13611 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.31■□□□□ 0.84
VCANP13611 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VCANP13611 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VCANP13611 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.31■□□□□ 0.84
VCANP13611 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VCANP13611 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.31■□□□□ 0.84
VCANP13611 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.31■□□□□ 0.84
VCANP13611 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.3■□□□□ 0.84
VCANP13611 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.3■□□□□ 0.84
VCANP13611 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCANP13611 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCANP13611 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCANP13611 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCANP13611 HTR5BP-201ENST00000430851 1154 ntBASIC20.3■□□□□ 0.84
VCANP13611 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.3■□□□□ 0.84
VCANP13611 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.3■□□□□ 0.84
VCANP13611 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
VCANP13611 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.3■□□□□ 0.84
VCANP13611 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCANP13611 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCANP13611 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
VCANP13611 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.3■□□□□ 0.84
VCANP13611 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.3■□□□□ 0.84
VCANP13611 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.3■□□□□ 0.84
VCANP13611 AC112497.1-201ENST00000624824 639 ntBASIC20.3■□□□□ 0.84
VCANP13611 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.3■□□□□ 0.84
VCANP13611 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
VCANP13611 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCANP13611 AC243591.1-201ENST00000452967 1364 ntBASIC20.3■□□□□ 0.84
VCANP13611 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
VCANP13611 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCANP13611 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.3■□□□□ 0.84
VCANP13611 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.3■□□□□ 0.84
VCANP13611 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VCANP13611 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.29■□□□□ 0.84
VCANP13611 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCANP13611 TSSC2-201ENST00000450217 709 ntBASIC20.29■□□□□ 0.84
VCANP13611 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.29■□□□□ 0.84
VCANP13611 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.29■□□□□ 0.84
VCANP13611 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VCANP13611 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VCANP13611 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCANP13611 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.29■□□□□ 0.84
VCANP13611 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.29■□□□□ 0.84
VCANP13611 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCANP13611 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.29■□□□□ 0.84
VCANP13611 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VCANP13611 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCANP13611 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.29■□□□□ 0.84
VCANP13611 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
VCANP13611 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCANP13611 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCANP13611 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.29■□□□□ 0.84
VCANP13611 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VCANP13611 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VCANP13611 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VCANP13611 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.28■□□□□ 0.84
VCANP13611 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.28■□□□□ 0.84
VCANP13611 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VCANP13611 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VCANP13611 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.28■□□□□ 0.84
VCANP13611 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.28■□□□□ 0.84
VCANP13611 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VCANP13611 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.28■□□□□ 0.84
VCANP13611 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VCANP13611 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
VCANP13611 PGAM5P1-201ENST00000518923 814 ntBASIC20.28■□□□□ 0.84
VCANP13611 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
VCANP13611 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
VCANP13611 AC133561.1-201ENST00000568600 2415 ntBASIC20.28■□□□□ 0.84
VCANP13611 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
VCANP13611 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20.28■□□□□ 0.84
VCANP13611 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.28■□□□□ 0.84
VCANP13611 FOSL1P1-201ENST00000511041 816 ntBASIC20.28■□□□□ 0.84
VCANP13611 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
VCANP13611 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.27■□□□□ 0.84
VCANP13611 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.27■□□□□ 0.84
VCANP13611 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
VCANP13611 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
VCANP13611 AL390719.2-201ENST00000606993 987 ntBASIC20.27■□□□□ 0.84
VCANP13611 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.27■□□□□ 0.84
VCANP13611 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCANP13611 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCANP13611 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VCANP13611 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCANP13611 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCANP13611 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VCANP13611 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCANP13611 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCANP13611 AC092597.1-201ENST00000487352 616 ntBASIC20.27■□□□□ 0.84
VCANP13611 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.27■□□□□ 0.84
VCANP13611 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.27■□□□□ 0.84
VCANP13611 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
VCANP13611 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
VCANP13611 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms