Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.31■□□□□ 0.68
COL6A2P12110 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A2P12110 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
COL6A2P12110 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A2P12110 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL6A2P12110 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A2P12110 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.31■□□□□ 0.68
COL6A2P12110 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A2P12110 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL6A2P12110 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A2P12110 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A2P12110 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL6A2P12110 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.3■□□□□ 0.68
COL6A2P12110 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
COL6A2P12110 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
COL6A2P12110 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
COL6A2P12110 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.3■□□□□ 0.68
COL6A2P12110 AL390719.1-204ENST00000412397 1219 ntBASIC19.3■□□□□ 0.68
COL6A2P12110 AC004911.1-201ENST00000416316 871 ntBASIC19.3■□□□□ 0.68
COL6A2P12110 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.3■□□□□ 0.68
COL6A2P12110 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.3■□□□□ 0.68
COL6A2P12110 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.3■□□□□ 0.68
COL6A2P12110 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.3■□□□□ 0.68
COL6A2P12110 AC022517.1-201ENST00000592429 346 ntBASIC19.3■□□□□ 0.68
COL6A2P12110 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.3■□□□□ 0.68
COL6A2P12110 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A2P12110 MKRN4P-201ENST00000444706 1521 ntBASIC19.3■□□□□ 0.68
COL6A2P12110 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.3■□□□□ 0.68
COL6A2P12110 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
COL6A2P12110 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL6A2P12110 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.29■□□□□ 0.68
COL6A2P12110 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.29■□□□□ 0.68
COL6A2P12110 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.29■□□□□ 0.68
COL6A2P12110 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
COL6A2P12110 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.29■□□□□ 0.68
COL6A2P12110 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A2P12110 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
COL6A2P12110 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
COL6A2P12110 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
COL6A2P12110 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A2P12110 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
COL6A2P12110 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A2P12110 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.29■□□□□ 0.68
COL6A2P12110 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A2P12110 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL6A2P12110 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL6A2P12110 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL6A2P12110 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A2P12110 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.28■□□□□ 0.68
COL6A2P12110 AF201337.1-201ENST00000520239 748 ntBASIC19.28■□□□□ 0.68
COL6A2P12110 AC005829.2-201ENST00000571422 1056 ntBASIC19.28■□□□□ 0.68
COL6A2P12110 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL6A2P12110 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A2P12110 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.28■□□□□ 0.68
COL6A2P12110 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL6A2P12110 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.28■□□□□ 0.68
COL6A2P12110 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A2P12110 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
COL6A2P12110 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A2P12110 AC141586.3-201ENST00000562166 1838 ntBASIC19.28■□□□□ 0.68
COL6A2P12110 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.27■□□□□ 0.68
COL6A2P12110 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
COL6A2P12110 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.27■□□□□ 0.68
COL6A2P12110 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A2P12110 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A2P12110 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms