Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VIMP08670 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VIMP08670 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.62■□□□□ 0.73
VIMP08670 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VIMP08670 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VIMP08670 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.62■□□□□ 0.73
VIMP08670 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VIMP08670 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 AL161938.1-201ENST00000569833 2180 ntBASIC19.61■□□□□ 0.73
VIMP08670 AC006333.2-201ENST00000607957 2099 ntBASIC19.61■□□□□ 0.73
VIMP08670 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.61■□□□□ 0.73
VIMP08670 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.61■□□□□ 0.73
VIMP08670 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VIMP08670 TSPY26P-201ENST00000476365 1326 ntBASIC19.61■□□□□ 0.73
VIMP08670 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
VIMP08670 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.61■□□□□ 0.73
VIMP08670 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.61■□□□□ 0.73
VIMP08670 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.61■□□□□ 0.73
VIMP08670 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 AC090164.3-201ENST00000610780 2143 ntBASIC19.61■□□□□ 0.73
VIMP08670 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.61■□□□□ 0.73
VIMP08670 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VIMP08670 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VIMP08670 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
VIMP08670 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
VIMP08670 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
VIMP08670 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.6■□□□□ 0.73
VIMP08670 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.6■□□□□ 0.73
VIMP08670 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.6■□□□□ 0.73
VIMP08670 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.6■□□□□ 0.73
VIMP08670 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.6■□□□□ 0.73
VIMP08670 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.6■□□□□ 0.73
VIMP08670 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.6■□□□□ 0.73
VIMP08670 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.6■□□□□ 0.73
VIMP08670 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
VIMP08670 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.6■□□□□ 0.73
VIMP08670 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.6■□□□□ 0.73
VIMP08670 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.6■□□□□ 0.73
VIMP08670 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VIMP08670 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.6■□□□□ 0.73
VIMP08670 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
VIMP08670 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.59■□□□□ 0.73
VIMP08670 AC007322.3-201ENST00000426526 701 ntBASIC19.59■□□□□ 0.73
VIMP08670 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.59■□□□□ 0.73
VIMP08670 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.59■□□□□ 0.73
VIMP08670 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.59■□□□□ 0.73
VIMP08670 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.59■□□□□ 0.73
VIMP08670 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.59■□□□□ 0.73
VIMP08670 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VIMP08670 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VIMP08670 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VIMP08670 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.58■□□□□ 0.73
VIMP08670 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VIMP08670 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VIMP08670 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VIMP08670 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
VIMP08670 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms