Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
NPHP1O15259 AP000692.2-201ENST00000608391 879 ntBASIC24.63■■□□□ 1.53
NPHP1O15259 AC091076.1-201ENST00000610741 619 ntBASIC24.63■■□□□ 1.53
NPHP1O15259 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
NPHP1O15259 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP1O15259 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP1O15259 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP1O15259 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP1O15259 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
NPHP1O15259 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC24.62■■□□□ 1.53
NPHP1O15259 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
NPHP1O15259 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
NPHP1O15259 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
NPHP1O15259 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
NPHP1O15259 PHGDH-210ENST00000641115 1638 ntBASIC24.62■■□□□ 1.53
NPHP1O15259 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC24.62■■□□□ 1.53
NPHP1O15259 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
NPHP1O15259 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
NPHP1O15259 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC24.62■■□□□ 1.53
NPHP1O15259 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC24.62■■□□□ 1.53
NPHP1O15259 USF2-205ENST00000594064 1179 ntTSL 2 BASIC24.62■■□□□ 1.53
NPHP1O15259 AC130371.2-201ENST00000619443 611 ntBASIC24.62■■□□□ 1.53
NPHP1O15259 AL358472.4-201ENST00000633140 710 ntBASIC24.62■■□□□ 1.53
NPHP1O15259 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
NPHP1O15259 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
NPHP1O15259 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
NPHP1O15259 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
NPHP1O15259 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NPHP1O15259 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
NPHP1O15259 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NPHP1O15259 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC24.61■■□□□ 1.53
NPHP1O15259 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
NPHP1O15259 AC117947.1-201ENST00000427448 529 ntBASIC24.61■■□□□ 1.53
NPHP1O15259 FAM207BP-201ENST00000447172 505 ntBASIC24.61■■□□□ 1.53
NPHP1O15259 AC092647.4-201ENST00000457211 535 ntBASIC24.61■■□□□ 1.53
NPHP1O15259 AC063952.2-201ENST00000498792 1227 ntBASIC24.61■■□□□ 1.53
NPHP1O15259 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC24.61■■□□□ 1.53
NPHP1O15259 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC24.61■■□□□ 1.53
NPHP1O15259 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
NPHP1O15259 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
NPHP1O15259 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NPHP1O15259 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NPHP1O15259 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC24.61■■□□□ 1.53
NPHP1O15259 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC24.61■■□□□ 1.53
NPHP1O15259 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC24.61■■□□□ 1.53
NPHP1O15259 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NPHP1O15259 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
NPHP1O15259 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
NPHP1O15259 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NPHP1O15259 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC24.6■■□□□ 1.53
NPHP1O15259 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
NPHP1O15259 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NPHP1O15259 GUK1-204ENST00000366721 689 ntTSL 3 BASIC24.6■■□□□ 1.53
NPHP1O15259 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC24.6■■□□□ 1.53
NPHP1O15259 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
NPHP1O15259 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC24.6■■□□□ 1.53
NPHP1O15259 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
NPHP1O15259 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NPHP1O15259 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC24.6■■□□□ 1.53
NPHP1O15259 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC24.6■■□□□ 1.53
NPHP1O15259 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NPHP1O15259 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC24.6■■□□□ 1.53
NPHP1O15259 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC24.6■■□□□ 1.53
NPHP1O15259 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
NPHP1O15259 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NPHP1O15259 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC24.6■■□□□ 1.53
NPHP1O15259 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
NPHP1O15259 AC092720.2-201ENST00000602388 1665 ntBASIC24.59■■□□□ 1.53
NPHP1O15259 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NPHP1O15259 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
NPHP1O15259 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NPHP1O15259 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC24.59■■□□□ 1.53
NPHP1O15259 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
NPHP1O15259 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NPHP1O15259 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NPHP1O15259 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC24.59■■□□□ 1.53
NPHP1O15259 AC139887.4-201ENST00000607877 719 ntBASIC24.59■■□□□ 1.53
NPHP1O15259 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NPHP1O15259 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NPHP1O15259 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
NPHP1O15259 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
NPHP1O15259 AC006128.1-201ENST00000624704 1661 ntBASIC24.59■■□□□ 1.53
NPHP1O15259 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
NPHP1O15259 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
NPHP1O15259 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
NPHP1O15259 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.53
NPHP1O15259 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
NPHP1O15259 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC24.58■■□□□ 1.53
NPHP1O15259 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
NPHP1O15259 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC24.58■■□□□ 1.53
NPHP1O15259 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC24.58■■□□□ 1.53
NPHP1O15259 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC24.58■■□□□ 1.53
NPHP1O15259 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
NPHP1O15259 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC24.58■■□□□ 1.52
NPHP1O15259 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
NPHP1O15259 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC24.57■■□□□ 1.52
NPHP1O15259 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC24.57■■□□□ 1.52
NPHP1O15259 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
NPHP1O15259 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
NPHP1O15259 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms