Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
PDLIM3Q53GG5 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
PDLIM3Q53GG5 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
PDLIM3Q53GG5 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 RNFT1P3-201ENST00000340898 1052 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 MIR133A2-201ENST00000347538 102 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 SNORA21-201ENST00000362423 132 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 RNA5SP110-201ENST00000362638 115 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 MIR1286-201ENST00000408112 78 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 GAS5-202ENST00000414075 413 ntTSL 2 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 NENFP1-201ENST00000419476 466 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 HNRNPA1P29-201ENST00000426409 879 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 VN1R21P-201ENST00000426703 765 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 VTI1BP4-201ENST00000427516 527 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 RPL23AP4-201ENST00000427757 463 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC138761.5-201ENST00000433967 325 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 PCBP2P1-201ENST00000437262 977 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AL663074.2-201ENST00000440621 479 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 RPS7P3-201ENST00000443360 580 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 RPL7L1P1-201ENST00000448259 785 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 RPL10P17-201ENST00000453852 316 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 GYG1P1-201ENST00000460864 698 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 RPL5P13-201ENST00000462840 709 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 RPL5P22-201ENST00000480199 884 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 LARP7P4-201ENST00000481075 878 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC093014.1-201ENST00000548926 724 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 RPL10P14-201ENST00000565265 298 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC015911.5-201ENST00000587076 451 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 COX6CP7-201ENST00000597056 208 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC135178.6-201ENST00000605314 398 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC019131.2-201ENST00000609071 870 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC025016.1-201ENST00000616746 682 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 YES1P1-201ENST00000418510 1628 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 NEPNP-201ENST00000404786 1371 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 AC008627.1-201ENST00000517511 1704 ntBASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC4.74□□□□□ -1.65
PDLIM3Q53GG5 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 AL136520.1-201ENST00000600311 1322 ntBASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 AP000473.2-201ENST00000602659 1537 ntBASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 RNA5SP507-201ENST00000363603 121 ntBASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 MIR141-201ENST00000384975 95 ntBASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 SNORA68.2-201ENST00000391263 128 ntBASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 AC009302.1-201ENST00000417147 390 ntBASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.73□□□□□ -1.65
PDLIM3Q53GG5 ARL2BPP3-201ENST00000421226 480 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms