Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.98□□□□□ -1.45
BRCA1P38398 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.98□□□□□ -1.45
BRCA1P38398 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.98□□□□□ -1.45
BRCA1P38398 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.98□□□□□ -1.45
BRCA1P38398 AC006130.2-201ENST00000586202 326 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.98□□□□□ -1.45
BRCA1P38398 AC087821.1-201ENST00000623639 567 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 MIR492-201ENST00000638676 116 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
BRCA1P38398 AC120338.1-201ENST00000625074 1541 ntBASIC5.98□□□□□ -1.45
BRCA1P38398 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
BRCA1P38398 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
BRCA1P38398 AL355834.1-201ENST00000556602 3965 ntBASIC5.97□□□□□ -1.45
BRCA1P38398 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 AL731566.1-201ENST00000620490 1937 ntBASIC5.97□□□□□ -1.45
BRCA1P38398 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
BRCA1P38398 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.97□□□□□ -1.45
BRCA1P38398 SNORA70.10-201ENST00000384515 134 ntBASIC5.97□□□□□ -1.45
BRCA1P38398 AP001324.1-201ENST00000428553 399 ntBASIC5.97□□□□□ -1.45
BRCA1P38398 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.97□□□□□ -1.45
BRCA1P38398 RN7SL189P-201ENST00000468631 289 ntBASIC5.97□□□□□ -1.45
BRCA1P38398 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.97□□□□□ -1.45
BRCA1P38398 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.97□□□□□ -1.45
BRCA1P38398 AC007497.1-201ENST00000610421 561 ntBASIC5.97□□□□□ -1.45
BRCA1P38398 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.97□□□□□ -1.45
BRCA1P38398 SNX18P1Y-201ENST00000616231 511 ntBASIC5.97□□□□□ -1.45
BRCA1P38398 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
BRCA1P38398 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC5.97□□□□□ -1.45
BRCA1P38398 STX3-208ENST00000641815 3236 ntBASIC5.97□□□□□ -1.45
BRCA1P38398 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 SAMMSON-210ENST00000641260 1308 ntBASIC5.97□□□□□ -1.45
BRCA1P38398 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.97□□□□□ -1.45
BRCA1P38398 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.97□□□□□ -1.45
BRCA1P38398 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.97□□□□□ -1.45
BRCA1P38398 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.97□□□□□ -1.45
BRCA1P38398 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
BRCA1P38398 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.45
BRCA1P38398 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
BRCA1P38398 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
BRCA1P38398 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.96□□□□□ -1.45
BRCA1P38398 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.96□□□□□ -1.45
BRCA1P38398 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.96□□□□□ -1.45
BRCA1P38398 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.96□□□□□ -1.45
BRCA1P38398 SETP4-201ENST00000455717 868 ntBASIC5.96□□□□□ -1.45
BRCA1P38398 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC5.96□□□□□ -1.45
BRCA1P38398 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.96□□□□□ -1.45
BRCA1P38398 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.96□□□□□ -1.45
BRCA1P38398 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.96□□□□□ -1.45
BRCA1P38398 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.96□□□□□ -1.45
BRCA1P38398 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
BRCA1P38398 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
BRCA1P38398 RAD17P1-201ENST00000418130 2042 ntBASIC5.96□□□□□ -1.46
BRCA1P38398 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
BRCA1P38398 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
BRCA1P38398 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
BRCA1P38398 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
BRCA1P38398 SMG1P6-201ENST00000532337 2930 ntBASIC5.96□□□□□ -1.46
BRCA1P38398 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC5.96□□□□□ -1.46
BRCA1P38398 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.96□□□□□ -1.46
BRCA1P38398 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.96□□□□□ -1.46
BRCA1P38398 AL022722.2-201ENST00000402519 180 ntBASIC5.96□□□□□ -1.46
BRCA1P38398 RNA5SP317-201ENST00000410176 116 ntBASIC5.96□□□□□ -1.46
BRCA1P38398 RNA5SP311-201ENST00000411290 116 ntBASIC5.96□□□□□ -1.46
BRCA1P38398 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.96□□□□□ -1.46
BRCA1P38398 ACTR3P2-201ENST00000439585 1257 ntBASIC5.96□□□□□ -1.46
BRCA1P38398 IGBP1P4-201ENST00000503202 879 ntBASIC5.96□□□□□ -1.46
BRCA1P38398 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.96□□□□□ -1.46
BRCA1P38398 RNA5SP315-201ENST00000516340 116 ntBASIC5.96□□□□□ -1.46
BRCA1P38398 RNA5SP312-201ENST00000517068 116 ntBASIC5.96□□□□□ -1.46
BRCA1P38398 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.96□□□□□ -1.46
BRCA1P38398 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.96□□□□□ -1.46
BRCA1P38398 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.96□□□□□ -1.46
BRCA1P38398 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.96□□□□□ -1.46
BRCA1P38398 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
BRCA1P38398 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.96□□□□□ -1.46
BRCA1P38398 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
BRCA1P38398 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
BRCA1P38398 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
BRCA1P38398 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 AL022323.4-201ENST00000623980 13120 ntBASIC5.95□□□□□ -1.46
BRCA1P38398 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
BRCA1P38398 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.95□□□□□ -1.46
BRCA1P38398 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
BRCA1P38398 DMD-222ENST00000474231 5209 ntTSL 5 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms