Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HMGB3P15-201ENST00000507326 574 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.51□□□□□ -1.37
COL8A1P27658 RNU6-835P-201ENST00000516974 104 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 RN7SKP256-201ENST00000517201 314 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.51□□□□□ -1.37
COL8A1P27658 AC104986.1-201ENST00000517978 436 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.51□□□□□ -1.37
COL8A1P27658 IGHVIII-25-1-201ENST00000522143 241 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.51□□□□□ -1.37
COL8A1P27658 AP004833.3-201ENST00000531893 322 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.51□□□□□ -1.37
COL8A1P27658 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.51□□□□□ -1.37
COL8A1P27658 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC6.51□□□□□ -1.37
COL8A1P27658 RPL21P5-201ENST00000554662 472 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC6.51□□□□□ -1.37
COL8A1P27658 MIR4312-201ENST00000579909 76 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 MIR4742-201ENST00000581069 85 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AL589863.1-201ENST00000595383 631 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 RPS27AP19-201ENST00000597285 458 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC6.51□□□□□ -1.37
COL8A1P27658 AC125494.2-201ENST00000602431 657 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AL596327.1-201ENST00000603629 213 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 PRELID3BP8-201ENST00000604148 295 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AC007938.3-201ENST00000604965 623 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AC004890.3-201ENST00000605566 1095 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AC005014.2-201ENST00000607795 599 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC6.51□□□□□ -1.37
COL8A1P27658 AC093913.1-201ENST00000614178 329 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AC004696.1-201ENST00000614345 607 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 CCL14-202ENST00000618404 898 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL8A1P27658 AC005753.1-201ENST00000623837 618 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AC073593.1-201ENST00000624500 411 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 AC026108.1-201ENST00000635444 547 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 CORO1C-202ENST00000420959 3921 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL8A1P27658 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL8A1P27658 HIST1H2BN-203ENST00000606613 4137 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL8A1P27658 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL8A1P27658 AC011447.7-201ENST00000624228 1590 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL8A1P27658 CUL4AP1-201ENST00000514750 1863 ntBASIC6.51□□□□□ -1.37
COL8A1P27658 SAR1A-202ENST00000373238 3227 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
COL8A1P27658 ZNF331-216ENST00000511593 1985 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
COL8A1P27658 ESRRG-222ENST00000493748 2074 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL8A1P27658 MMGT1-201ENST00000305963 3738 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL8A1P27658 CAST-236ENST00000511782 2466 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
COL8A1P27658 LINC01105-204ENST00000444416 2695 ntTSL 2 BASIC6.51□□□□□ -1.37
COL8A1P27658 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
COL8A1P27658 AC061975.5-201ENST00000584928 1441 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 LINC01427-202ENST00000635258 4566 ntTSL 5 BASIC6.5□□□□□ -1.37
COL8A1P27658 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.5□□□□□ -1.37
COL8A1P27658 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 AL139805.2-201ENST00000455305 2433 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 ZIM3-201ENST00000269834 2627 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 LINC01692-201ENST00000441009 2719 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 GTF2IRD2P1-201ENST00000449689 2749 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 PTPN14-205ENST00000543945 3842 ntTSL 5 BASIC6.5□□□□□ -1.37
COL8A1P27658 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 APBB2-224ENST00000513140 4166 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 MFSD8-227ENST00000641393 4069 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 ZNF182-201ENST00000376943 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 LINC02059-202ENST00000506471 2094 ntTSL 2 BASIC6.5□□□□□ -1.37
COL8A1P27658 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 EPHA7-201ENST00000369297 1885 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 CDK15-202ENST00000410091 1780 ntAPPRIS P3 TSL 2 BASIC6.5□□□□□ -1.37
COL8A1P27658 UGT2B24P-201ENST00000514441 1597 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 AL592429.1-201ENST00000403909 1473 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 NMD3P1-201ENST00000439704 1488 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 HMGB1P5-201ENST00000255320 642 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 OR11H4-201ENST00000315409 1082 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 RIT2-201ENST00000326695 1092 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 SNORA32.2-201ENST00000384049 122 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
COL8A1P27658 RNU6-308P-201ENST00000390957 107 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 EI24P3-201ENST00000399046 1062 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 RN7SKP188-201ENST00000410789 317 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 RPL18AP14-201ENST00000417685 526 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 TEX41-204ENST00000423031 491 ntTSL 4 BASIC6.5□□□□□ -1.37
COL8A1P27658 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC6.5□□□□□ -1.37
COL8A1P27658 AC008267.5-201ENST00000424928 265 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC6.5□□□□□ -1.37
COL8A1P27658 PUDPP2-201ENST00000431423 643 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
COL8A1P27658 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC6.5□□□□□ -1.37
COL8A1P27658 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC6.5□□□□□ -1.37
COL8A1P27658 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.5□□□□□ -1.37
COL8A1P27658 AL161626.1-201ENST00000441480 490 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC6.5□□□□□ -1.37
COL8A1P27658 TIMM8BP2-201ENST00000445940 251 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 AL590365.1-201ENST00000450788 243 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 AC239798.3-201ENST00000454459 408 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 MTATP8P1-201ENST00000467115 207 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 MTND4P17-201ENST00000470444 350 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 RN7SL392P-201ENST00000473024 299 ntBASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 155.6 ms