Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CLDN9O95484 RNU2-22P-201ENST00000411266 212 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 CFL1P1-202ENST00000432948 411 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.93□□□□□ -1.62
CLDN9O95484 RPL35AP21-201ENST00000437667 333 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC4.93□□□□□ -1.62
CLDN9O95484 RPL7AP61-201ENST00000443410 636 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.93□□□□□ -1.62
CLDN9O95484 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.93□□□□□ -1.62
CLDN9O95484 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CLDN9O95484 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.93□□□□□ -1.62
CLDN9O95484 OR2AO1P-201ENST00000476497 403 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.93□□□□□ -1.62
CLDN9O95484 SNORD116-30-201ENST00000516468 85 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.93□□□□□ -1.62
CLDN9O95484 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.93□□□□□ -1.62
CLDN9O95484 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.93□□□□□ -1.62
CLDN9O95484 AC095055.1-201ENST00000603472 1113 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 AC239803.2-201ENST00000610161 430 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 RPSAP73-201ENST00000614820 330 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.93□□□□□ -1.62
CLDN9O95484 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.93□□□□□ -1.62
CLDN9O95484 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.93□□□□□ -1.62
CLDN9O95484 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
CLDN9O95484 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CLDN9O95484 AC007342.5-201ENST00000571340 2142 ntBASIC4.93□□□□□ -1.62
CLDN9O95484 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
CLDN9O95484 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CLDN9O95484 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN9O95484 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN9O95484 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN9O95484 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN9O95484 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.92□□□□□ -1.62
CLDN9O95484 RPL35AP24-201ENST00000413846 330 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 NPM1P4-201ENST00000414095 812 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 SLC35E1P1-201ENST00000419313 864 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.92□□□□□ -1.62
CLDN9O95484 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC4.92□□□□□ -1.62
CLDN9O95484 MTCYBP14-201ENST00000457471 715 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
CLDN9O95484 AC009127.1-201ENST00000467090 155 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 RPS26P39-201ENST00000469206 341 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 RPS21P4-201ENST00000487122 248 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.92□□□□□ -1.62
CLDN9O95484 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
CLDN9O95484 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.92□□□□□ -1.62
CLDN9O95484 RN7SKP34-201ENST00000516142 244 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
CLDN9O95484 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.92□□□□□ -1.62
CLDN9O95484 AC010615.3-201ENST00000597319 394 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 AC073869.10-201ENST00000642016 354 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
CLDN9O95484 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN9O95484 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.92□□□□□ -1.62
CLDN9O95484 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.92□□□□□ -1.62
CLDN9O95484 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN9O95484 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN9O95484 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.92□□□□□ -1.62
CLDN9O95484 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
CLDN9O95484 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.92□□□□□ -1.62
CLDN9O95484 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN9O95484 PANDAR-201ENST00000629595 1506 ntBASIC4.92□□□□□ -1.62
CLDN9O95484 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN9O95484 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN9O95484 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC4.92□□□□□ -1.62
CLDN9O95484 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN9O95484 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
CLDN9O95484 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN9O95484 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN9O95484 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CLDN9O95484 RARSP1-201ENST00000542842 1418 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN9O95484 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN9O95484 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN9O95484 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN9O95484 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
CLDN9O95484 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CLDN9O95484 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN9O95484 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CLDN9O95484 SNORA17.1-201ENST00000362945 126 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 RNU1-43P-201ENST00000365052 165 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 AL353625.1-202ENST00000366273 571 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CLDN9O95484 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN9O95484 AC211486.3-201ENST00000412694 621 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.91□□□□□ -1.62
CLDN9O95484 RAB9AP4-201ENST00000415230 609 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.91□□□□□ -1.62
CLDN9O95484 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.91□□□□□ -1.62
CLDN9O95484 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.91□□□□□ -1.62
CLDN9O95484 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 BRWD1P3-201ENST00000428816 390 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC4.91□□□□□ -1.62
CLDN9O95484 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.91□□□□□ -1.62
CLDN9O95484 GTF3AP5-201ENST00000442645 697 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 AC093166.2-201ENST00000455969 1017 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 RPS4XP1-201ENST00000482189 787 ntBASIC4.91□□□□□ -1.62
CLDN9O95484 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms