Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC5.66□□□□□ -1.5
PROM1O43490 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.66□□□□□ -1.5
PROM1O43490 AC106872.4-201ENST00000510050 523 ntBASIC5.66□□□□□ -1.5
PROM1O43490 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.66□□□□□ -1.5
PROM1O43490 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.66□□□□□ -1.5
PROM1O43490 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC5.66□□□□□ -1.5
PROM1O43490 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PROM1O43490 AC244502.2-201ENST00000543361 851 ntBASIC5.66□□□□□ -1.5
PROM1O43490 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.66□□□□□ -1.5
PROM1O43490 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.66□□□□□ -1.5
PROM1O43490 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC5.66□□□□□ -1.5
PROM1O43490 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
PROM1O43490 MTND4P33-201ENST00000556706 766 ntBASIC5.66□□□□□ -1.5
PROM1O43490 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
PROM1O43490 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.66□□□□□ -1.5
PROM1O43490 MTCYBP33-201ENST00000575007 1130 ntBASIC5.66□□□□□ -1.5
PROM1O43490 AP005119.1-201ENST00000580956 292 ntBASIC5.66□□□□□ -1.5
PROM1O43490 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.66□□□□□ -1.5
PROM1O43490 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PROM1O43490 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.66□□□□□ -1.5
PROM1O43490 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.66□□□□□ -1.5
PROM1O43490 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
PROM1O43490 AC015922.4-201ENST00000612568 690 ntBASIC5.66□□□□□ -1.5
PROM1O43490 uc_338.26-201ENST00000612659 160 ntBASIC5.66□□□□□ -1.5
PROM1O43490 AC009090.3-201ENST00000616553 565 ntBASIC5.66□□□□□ -1.5
PROM1O43490 MIR6886-201ENST00000619864 61 ntBASIC5.66□□□□□ -1.5
PROM1O43490 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.66□□□□□ -1.5
PROM1O43490 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.66□□□□□ -1.5
PROM1O43490 MIR3974-201ENST00000637126 96 ntBASIC5.66□□□□□ -1.5
PROM1O43490 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
PROM1O43490 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.66□□□□□ -1.5
PROM1O43490 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
PROM1O43490 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
PROM1O43490 AC123769.1-201ENST00000530992 3192 ntBASIC5.66□□□□□ -1.5
PROM1O43490 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PROM1O43490 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
PROM1O43490 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
PROM1O43490 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.66□□□□□ -1.5
PROM1O43490 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PROM1O43490 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.66□□□□□ -1.5
PROM1O43490 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PROM1O43490 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
PROM1O43490 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.65□□□□□ -1.5
PROM1O43490 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.65□□□□□ -1.5
PROM1O43490 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PROM1O43490 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PROM1O43490 RNU5B-1-201ENST00000363286 116 ntBASIC5.65□□□□□ -1.5
PROM1O43490 RNU4-68P-201ENST00000364314 141 ntBASIC5.65□□□□□ -1.5
PROM1O43490 Y_RNA.318-201ENST00000365131 97 ntBASIC5.65□□□□□ -1.5
PROM1O43490 RN7SKP69-201ENST00000365390 305 ntBASIC5.65□□□□□ -1.5
PROM1O43490 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.65□□□□□ -1.5
PROM1O43490 SNRPEP6-201ENST00000407465 277 ntBASIC5.65□□□□□ -1.5
PROM1O43490 RNU4-22P-201ENST00000411058 166 ntBASIC5.65□□□□□ -1.5
PROM1O43490 HMGN1P20-201ENST00000411849 300 ntBASIC5.65□□□□□ -1.5
PROM1O43490 Z68694.1-201ENST00000413929 841 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC016907.1-201ENST00000419483 435 ntBASIC5.65□□□□□ -1.5
PROM1O43490 DSTNP5-201ENST00000427921 523 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.65□□□□□ -1.5
PROM1O43490 CYCSP51-201ENST00000443545 318 ntBASIC5.65□□□□□ -1.5
PROM1O43490 RPS27P5-201ENST00000444247 244 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PROM1O43490 AC104164.1-201ENST00000460282 590 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC068228.1-201ENST00000461723 211 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC023245.1-201ENST00000468501 517 ntBASIC5.65□□□□□ -1.5
PROM1O43490 PRDX3P4-201ENST00000470828 747 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC098847.1-201ENST00000473094 348 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.65□□□□□ -1.5
PROM1O43490 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.65□□□□□ -1.5
PROM1O43490 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.65□□□□□ -1.5
PROM1O43490 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.65□□□□□ -1.5
PROM1O43490 SNORA3.4-201ENST00000515969 96 ntBASIC5.65□□□□□ -1.5
PROM1O43490 RN7SKP288-201ENST00000516227 268 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC136777.2-201ENST00000522979 358 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.65□□□□□ -1.5
PROM1O43490 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC5.65□□□□□ -1.5
PROM1O43490 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.65□□□□□ -1.5
PROM1O43490 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
PROM1O43490 AL356057.1-201ENST00000533798 831 ntBASIC5.65□□□□□ -1.5
PROM1O43490 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.65□□□□□ -1.5
PROM1O43490 AC009094.1-201ENST00000564443 426 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.65□□□□□ -1.5
PROM1O43490 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.65□□□□□ -1.5
PROM1O43490 AC021483.2-201ENST00000567415 758 ntBASIC5.65□□□□□ -1.5
PROM1O43490 MIR4443-201ENST00000585052 53 ntBASIC5.65□□□□□ -1.5
PROM1O43490 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.65□□□□□ -1.5
PROM1O43490 AC061975.8-201ENST00000587058 721 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC008521.2-201ENST00000591021 259 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.65□□□□□ -1.5
PROM1O43490 AL109653.1-201ENST00000603091 248 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AL353778.1-201ENST00000603149 408 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC005021.1-201ENST00000608730 355 ntBASIC5.65□□□□□ -1.5
PROM1O43490 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PROM1O43490 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PROM1O43490 AC096708.4-201ENST00000620563 552 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AL390318.1-201ENST00000624564 687 ntBASIC5.65□□□□□ -1.5
PROM1O43490 AC017037.3-201ENST00000625016 472 ntBASIC5.65□□□□□ -1.5
PROM1O43490 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.65□□□□□ -1.5
PROM1O43490 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.65□□□□□ -1.5
PROM1O43490 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PROM1O43490 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms