Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 NANOGP3-201ENST00000605855 286 ntBASIC5.67□□□□□ -1.5
EBF3Q9H4W6 AC034236.3-201ENST00000605999 461 ntBASIC5.67□□□□□ -1.5
EBF3Q9H4W6 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
EBF3Q9H4W6 AC022079.1-201ENST00000621546 602 ntBASIC5.67□□□□□ -1.5
EBF3Q9H4W6 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.67□□□□□ -1.5
EBF3Q9H4W6 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
EBF3Q9H4W6 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
EBF3Q9H4W6 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.67□□□□□ -1.5
EBF3Q9H4W6 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.67□□□□□ -1.5
EBF3Q9H4W6 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.67□□□□□ -1.5
EBF3Q9H4W6 AC068870.1-201ENST00000563737 2455 ntBASIC5.67□□□□□ -1.5
EBF3Q9H4W6 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
EBF3Q9H4W6 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC003985.2-201ENST00000562268 1669 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC120036.2-201ENST00000509729 1474 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 RNU6-670P-201ENST00000364312 104 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 SNORA67-201ENST00000384423 137 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC096921.1-201ENST00000411661 375 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC108075.1-201ENST00000424692 529 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 PRUNEP1-201ENST00000425846 705 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 USP12PY-201ENST00000427677 1064 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AL596266.1-201ENST00000448132 400 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 RPS23P1-201ENST00000491662 432 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 TRAV31-201ENST00000502780 342 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 ATG10-AS1-201ENST00000504846 648 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC104997.1-201ENST00000519761 717 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 HMGB1P40-201ENST00000525121 540 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AP001636.2-201ENST00000525517 696 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 OR10D4P-201ENST00000525892 951 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 PMS2P3-207ENST00000529061 717 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AP005403.1-201ENST00000579720 229 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 RN7SL708P-201ENST00000580952 299 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC010487.1-201ENST00000594408 1172 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC135803.1-201ENST00000608748 565 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AL136295.6-201ENST00000610486 658 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 MIR6133-201ENST00000617057 108 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC006386.1-201ENST00000619436 415 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC068870.2-201ENST00000620635 389 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 AC097372.4-201ENST00000625025 466 ntBASIC5.66□□□□□ -1.5
EBF3Q9H4W6 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
EBF3Q9H4W6 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 RNA5SP326-201ENST00000363209 110 ntBASIC5.65□□□□□ -1.5
EBF3Q9H4W6 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 RN7SKP125-201ENST00000410481 302 ntBASIC5.65□□□□□ -1.5
EBF3Q9H4W6 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 SRSF1P1-201ENST00000424058 520 ntBASIC5.65□□□□□ -1.5
EBF3Q9H4W6 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 TMEM183AP1-205ENST00000432739 290 ntBASIC5.65□□□□□ -1.5
EBF3Q9H4W6 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 MTATP6P14-201ENST00000455189 673 ntBASIC5.65□□□□□ -1.5
EBF3Q9H4W6 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.65□□□□□ -1.5
EBF3Q9H4W6 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms