Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 SNORA62.3-201ENST00000365110 153 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 HMGB3P5-201ENST00000428894 612 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 LINC02210-201ENST00000444561 288 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 RN7SL435P-201ENST00000584418 282 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AL160281.1-201ENST00000605307 311 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 SOCS5P3-201ENST00000425115 1576 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 ERG-203ENST00000398905 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 WBP11P1-201ENST00000562560 1931 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 MIR372-201ENST00000362225 67 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 RNA5SP283-201ENST00000365604 119 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 RPS17P17-201ENST00000419392 409 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 CRIP1P1-201ENST00000427567 185 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 RPS3AP12-201ENST00000443616 753 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 RPS24P16-201ENST00000497294 392 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AC022726.1-201ENST00000587475 207 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AL049794.2-201ENST00000616301 365 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AC114814.2-201ENST00000419195 485 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 CDY14P-201ENST00000431260 1014 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 CDY12P-201ENST00000440679 1015 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 RRM2P4-201ENST00000441721 562 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 CDY13P-201ENST00000445813 1015 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 CDY23P-201ENST00000451661 1014 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 SNORD125-201ENST00000459538 96 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AC108475.1-201ENST00000507880 950 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AC016550.3-201ENST00000515706 767 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 VN1R92P-201ENST00000598511 928 ntBASIC4.69□□□□□ -1.66
VPS13AQ96RL7 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 EIF4G3-201ENST00000264211 5802 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.69□□□□□ -1.66
VPS13AQ96RL7 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 AC006058.1-201ENST00000568686 5067 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 RNA5SP119-201ENST00000362715 117 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 MIR589-201ENST00000385238 99 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 RN7SKP202-201ENST00000410439 330 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms