Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC008638.1-201ENST00000506035 866 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 RN7SKP99-201ENST00000517028 307 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 SNORA43.3-201ENST00000517240 103 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AC116553.2-201ENST00000564203 463 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AL353600.1-201ENST00000608148 251 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AC079395.2-201ENST00000610982 737 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AL512624.1-201ENST00000613638 469 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 RBPJP2-201ENST00000618187 1444 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AC073869.7-201ENST00000640874 297 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AL596275.2-204ENST00000641628 552 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 AL596275.2-206ENST00000641957 626 ntBASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC112Q8NEF3 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 UGT2B26P-201ENST00000508672 1613 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 MAPK10-320ENST00000641462 6696 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 FABP7P2-201ENST00000429946 379 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AC092447.2-201ENST00000435487 669 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 SPRYD7P1-201ENST00000443861 570 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AL163193.1-201ENST00000444895 788 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AL161722.1-201ENST00000446972 1032 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AC108751.2-201ENST00000469993 231 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AC022795.1-201ENST00000473808 480 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 RN7SL441P-201ENST00000492388 296 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AC138866.2-201ENST00000508650 584 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AC074087.1-201ENST00000512059 724 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 TCP11X3P-202ENST00000514289 1254 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 NDUFB4P11-201ENST00000560510 395 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 RN7SL52P-201ENST00000584271 284 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 SDR42E1P1-201ENST00000611327 477 ntBASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC112Q8NEF3 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AC097461.1-201ENST00000568928 2821 ntBASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 DDX18P4-201ENST00000511690 1966 ntBASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 RNA5SP296-201ENST00000410523 111 ntBASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AP000534.2-201ENST00000412729 568 ntBASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 EEF1B2P6-201ENST00000445713 673 ntBASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AP000942.1-201ENST00000463969 747 ntBASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AL512310.9-201ENST00000553311 948 ntBASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.59□□□□□ -1.51
CCDC112Q8NEF3 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 172.3 ms