Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 RANP4-201ENST00000413361 655 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 AL356320.2-201ENST00000417263 507 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 AL449283.1-202ENST00000418249 604 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 OR5W1P-201ENST00000423705 938 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 DLGAP5P1-201ENST00000430307 464 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 DEFA9P-201ENST00000433042 285 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 MTND4P25-201ENST00000441039 533 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 REG1CP-206ENST00000447469 496 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 FRG2FP-204ENST00000453982 852 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VRK3Q8IV63 ANKRD26P4-201ENST00000455755 950 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 TRBV8-1-201ENST00000481590 279 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 CR383656.1-201ENST00000484916 377 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC111000.2-201ENST00000507775 550 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 RN7SKP67-201ENST00000515905 235 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 HMGB1P46-201ENST00000520062 610 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 NOP56P3-201ENST00000549457 385 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC023161.2-201ENST00000551218 780 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC092121.1-201ENST00000569452 202 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC064872.1-201ENST00000604823 1072 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 HIRAP1-201ENST00000605318 787 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC105129.3-201ENST00000605455 485 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC010245.2-201ENST00000606908 1167 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 AP002360.4-201ENST00000606980 481 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC092192.1-201ENST00000633154 1018 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VRK3Q8IV63 AC091305.2-201ENST00000624049 1576 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VRK3Q8IV63 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 ZNF542P-204ENST00000482727 1305 ntBASIC5.7□□□□□ -1.5
VRK3Q8IV63 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VRK3Q8IV63 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VRK3Q8IV63 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
VRK3Q8IV63 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VRK3Q8IV63 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VRK3Q8IV63 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VRK3Q8IV63 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VRK3Q8IV63 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VRK3Q8IV63 AC083837.1-201ENST00000565297 2994 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VRK3Q8IV63 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VRK3Q8IV63 SNORD113-6-201ENST00000363345 75 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 RNU6-636P-201ENST00000384598 107 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VRK3Q8IV63 AL357752.1-201ENST00000412817 349 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 RAD23BP2-201ENST00000416003 1207 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 MTCO1P21-201ENST00000416634 589 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 OR5BE1P-201ENST00000425977 939 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 AC093422.3-201ENST00000428506 305 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 MTCO1P45-201ENST00000431457 267 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 MTCYBP39-201ENST00000437562 491 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 EIF5AP4-201ENST00000441206 465 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 NPM1P13-201ENST00000452663 865 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 ACA64.1-201ENST00000459171 127 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VRK3Q8IV63 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 GAPDHP71-201ENST00000511530 1003 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 AC139365.2-201ENST00000517972 253 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 AC105185.1-201ENST00000518705 535 ntBASIC5.69□□□□□ -1.5
VRK3Q8IV63 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC5.69□□□□□ -1.5
VRK3Q8IV63 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms