Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL354890.1-201ENST00000413730 346 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AL356320.2-201ENST00000417263 507 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 ARL2BPP3-201ENST00000421226 480 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 OR5BE1P-201ENST00000425977 939 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC6.08□□□□□ -1.44
USP39Q53GS9 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC6.08□□□□□ -1.44
USP39Q53GS9 RPS7P2-201ENST00000435134 607 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 NMNAT1P2-201ENST00000435192 860 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.08□□□□□ -1.44
USP39Q53GS9 RPL31P3-201ENST00000458430 332 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AC008379.1-201ENST00000463655 464 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AC090543.1-201ENST00000492168 485 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC6.08□□□□□ -1.44
USP39Q53GS9 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC6.08□□□□□ -1.44
USP39Q53GS9 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.08□□□□□ -1.44
USP39Q53GS9 MGST2-204ENST00000506797 634 ntTSL 2 BASIC6.08□□□□□ -1.44
USP39Q53GS9 AC112518.2-201ENST00000508565 425 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC6.08□□□□□ -1.44
USP39Q53GS9 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC6.08□□□□□ -1.44
USP39Q53GS9 MRPS33P3-201ENST00000513456 322 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 RNU6-491P-201ENST00000516099 110 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 RN7SKP248-201ENST00000516278 305 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 SUMO2P19-201ENST00000518920 295 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AP001804.1-201ENST00000526868 919 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 AC023050.2-201ENST00000544968 387 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC6.08□□□□□ -1.44
USP39Q53GS9 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC6.08□□□□□ -1.44
USP39Q53GS9 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.08□□□□□ -1.44
USP39Q53GS9 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.08□□□□□ -1.44
USP39Q53GS9 AL133247.2-201ENST00000603236 482 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AC099785.1-201ENST00000605697 437 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC6.08□□□□□ -1.44
USP39Q53GS9 AL021368.3-201ENST00000607119 578 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 AL357562.1-201ENST00000624911 609 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC6.08□□□□□ -1.44
USP39Q53GS9 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.08□□□□□ -1.44
USP39Q53GS9 OR5BE1P-202ENST00000641168 1176 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 TCP1P3-201ENST00000414406 1498 ntBASIC6.08□□□□□ -1.44
USP39Q53GS9 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.08□□□□□ -1.44
USP39Q53GS9 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP39Q53GS9 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.07□□□□□ -1.44
USP39Q53GS9 ELL2P3-201ENST00000457883 1602 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
USP39Q53GS9 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.07□□□□□ -1.44
USP39Q53GS9 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
USP39Q53GS9 RN7SKP128-201ENST00000364270 303 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
USP39Q53GS9 MIR433-201ENST00000384837 93 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AL356131.1-201ENST00000405826 414 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 SNRPEP6-201ENST00000407465 277 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 RAD23BP2-201ENST00000416003 1207 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AC093155.2-201ENST00000420734 937 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 USP9YP26-201ENST00000421008 661 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC6.07□□□□□ -1.44
USP39Q53GS9 AC007562.1-201ENST00000421819 517 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC6.07□□□□□ -1.44
USP39Q53GS9 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC6.07□□□□□ -1.44
USP39Q53GS9 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.07□□□□□ -1.44
USP39Q53GS9 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 AC023274.2-201ENST00000445264 521 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC6.07□□□□□ -1.44
USP39Q53GS9 AC016027.4-201ENST00000450866 277 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 MTCO2P18-201ENST00000457151 658 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC6.07□□□□□ -1.44
USP39Q53GS9 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC6.07□□□□□ -1.44
USP39Q53GS9 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USP39Q53GS9 SETP6-201ENST00000479329 568 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AC109481.1-201ENST00000509173 282 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 RN7SKP5-201ENST00000517045 272 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 RNA5SP400-201ENST00000517155 111 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AC008429.4-201ENST00000521201 182 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC6.07□□□□□ -1.44
USP39Q53GS9 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC6.07□□□□□ -1.44
USP39Q53GS9 AC023161.2-201ENST00000551218 780 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC6.07□□□□□ -1.44
USP39Q53GS9 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC6.07□□□□□ -1.44
USP39Q53GS9 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 MTATP6P3-201ENST00000581686 676 ntBASIC6.07□□□□□ -1.44
USP39Q53GS9 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC6.07□□□□□ -1.44
USP39Q53GS9 AC141002.1-201ENST00000607025 279 ntBASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms