Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
PRKDCP78527 PSD4-205ENST00000441564 11234 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
PRKDCP78527 AC034229.2-201ENST00000566945 2508 ntBASIC3.43□□□□□ -1.86
PRKDCP78527 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC3.43□□□□□ -1.86
PRKDCP78527 TANC2-201ENST00000389520 6404 ntTSL 5 BASIC3.43□□□□□ -1.86
PRKDCP78527 AC002525.1-201ENST00000624392 1622 ntBASIC3.43□□□□□ -1.86
PRKDCP78527 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
PRKDCP78527 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
PRKDCP78527 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
PRKDCP78527 MYEF2-202ENST00000324324 10360 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
PRKDCP78527 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC3.43□□□□□ -1.86
PRKDCP78527 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
PRKDCP78527 FZD10-AS1-201ENST00000505807 10193 ntTSL 2 BASIC3.43□□□□□ -1.86
PRKDCP78527 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC3.42□□□□□ -1.86
PRKDCP78527 FABP5P2-201ENST00000439042 408 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.42□□□□□ -1.86
PRKDCP78527 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 AL357559.1-201ENST00000622228 274 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
PRKDCP78527 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 DOCK11P1-201ENST00000553480 5932 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 CEP152-202ENST00000380950 5635 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 MGP-201ENST00000228938 694 ntTSL 3 BASIC3.42□□□□□ -1.86
PRKDCP78527 RNU1-59P-201ENST00000364829 162 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 CYCSP43-201ENST00000438233 310 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 RPL7AP61-201ENST00000443410 636 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.42□□□□□ -1.86
PRKDCP78527 RN7SL691P-201ENST00000494487 301 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 NPM1P41-201ENST00000512920 831 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC3.42□□□□□ -1.86
PRKDCP78527 U1.25-201ENST00000614085 162 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 U1.34-201ENST00000618578 162 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 U1.31-201ENST00000620022 160 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 RNF123-214ENST00000629802 207 ntTSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 SACS-202ENST00000402364 15134 ntTSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC3.42□□□□□ -1.86
PRKDCP78527 BAZ2A-214ENST00000551812 8600 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 SNORA70H-201ENST00000383910 135 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 SNORA70J-201ENST00000384182 135 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 KRR1P1-201ENST00000419430 803 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 MTND4LP2-201ENST00000502312 285 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 AC006116.5-201ENST00000591936 559 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 UBA2-208ENST00000592791 910 ntTSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 AC011626.1-201ENST00000604710 562 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 SNORA51-201ENST00000606420 132 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 AC010632.3-201ENST00000611377 369 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 HIVEP2-203ENST00000367604 10032 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 ZEB2-234ENST00000636413 8984 ntTSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 SCAND2P-201ENST00000348993 8975 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 ZNF217-201ENST00000302342 5633 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 U3.32-201ENST00000408116 212 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC3.42□□□□□ -1.86
PRKDCP78527 SSR3-206ENST00000476217 807 ntTSL 3 BASIC3.42□□□□□ -1.86
PRKDCP78527 AC146944.2-203ENST00000502493 354 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.42□□□□□ -1.86
PRKDCP78527 AC139495.1-202ENST00000513164 354 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC3.42□□□□□ -1.86
PRKDCP78527 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.42□□□□□ -1.86
PRKDCP78527 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 MIR4286-201ENST00000580651 93 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC3.42□□□□□ -1.86
PRKDCP78527 AC012409.3-201ENST00000611343 981 ntBASIC3.42□□□□□ -1.86
PRKDCP78527 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC3.42□□□□□ -1.86
PRKDCP78527 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PRKDCP78527 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PRKDCP78527 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms