Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC5.63□□□□□ -1.51
PTPN9P43378 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.63□□□□□ -1.51
PTPN9P43378 HMGN1P9-201ENST00000515212 298 ntBASIC5.63□□□□□ -1.51
PTPN9P43378 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.63□□□□□ -1.51
PTPN9P43378 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC5.63□□□□□ -1.51
PTPN9P43378 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.63□□□□□ -1.51
PTPN9P43378 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.63□□□□□ -1.51
PTPN9P43378 AP004607.2-201ENST00000533949 322 ntBASIC5.63□□□□□ -1.51
PTPN9P43378 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.63□□□□□ -1.51
PTPN9P43378 SNORD95-201ENST00000579879 68 ntBASIC5.63□□□□□ -1.51
PTPN9P43378 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
PTPN9P43378 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.63□□□□□ -1.51
PTPN9P43378 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.63□□□□□ -1.51
PTPN9P43378 FAM72A-208ENST00000607379 1139 ntBASIC5.63□□□□□ -1.51
PTPN9P43378 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTPN9P43378 AC004477.3-201ENST00000614061 590 ntBASIC5.63□□□□□ -1.51
PTPN9P43378 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTPN9P43378 AC015722.2-201ENST00000622210 551 ntBASIC5.63□□□□□ -1.51
PTPN9P43378 AC090772.4-201ENST00000623599 362 ntBASIC5.63□□□□□ -1.51
PTPN9P43378 AP003400.3-201ENST00000624904 346 ntBASIC5.63□□□□□ -1.51
PTPN9P43378 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTPN9P43378 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.63□□□□□ -1.51
PTPN9P43378 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.63□□□□□ -1.51
PTPN9P43378 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTPN9P43378 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.63□□□□□ -1.51
PTPN9P43378 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
PTPN9P43378 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTPN9P43378 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 HSPA8P14-201ENST00000552265 1805 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 RNU6-792P-201ENST00000363490 107 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 RN7SKP69-201ENST00000365390 305 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 MIR620-201ENST00000385232 95 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 RPL10P10-201ENST00000403509 664 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 AL133388.1-201ENST00000404509 287 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 BTF3P9-201ENST00000418784 283 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.62□□□□□ -1.51
PTPN9P43378 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 RPL7AP49-201ENST00000429522 581 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 AL591438.1-201ENST00000433508 581 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC5.62□□□□□ -1.51
PTPN9P43378 AL161722.1-201ENST00000446972 1032 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 NPM1P17-201ENST00000479221 602 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 RPSAP51-201ENST00000497462 645 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 MTCO1P31-201ENST00000506355 492 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 AC021193.1-201ENST00000511607 420 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 CDC42P3-201ENST00000518493 633 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 OSBPL9P3-201ENST00000534523 595 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC5.62□□□□□ -1.51
PTPN9P43378 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 AC133794.1-201ENST00000602731 914 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 MTCO3P22-201ENST00000603219 784 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 SUGT1P3-202ENST00000604259 383 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 AL391834.2-201ENST00000609982 546 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 Z95327.3-201ENST00000610385 572 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC5.62□□□□□ -1.51
PTPN9P43378 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.62□□□□□ -1.51
PTPN9P43378 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 TCP11X1-202ENST00000622971 1372 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 MTCO1P4-201ENST00000520516 1409 ntBASIC5.62□□□□□ -1.51
PTPN9P43378 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.62□□□□□ -1.51
PTPN9P43378 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.62□□□□□ -1.51
PTPN9P43378 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.62□□□□□ -1.51
PTPN9P43378 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTPN9P43378 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.61□□□□□ -1.51
PTPN9P43378 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
PTPN9P43378 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTPN9P43378 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTPN9P43378 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTPN9P43378 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
PTPN9P43378 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTPN9P43378 RNA5SP435-201ENST00000364044 108 ntBASIC5.61□□□□□ -1.51
PTPN9P43378 RNA5SP242-201ENST00000364171 118 ntBASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms