Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HLA-DMBP28068 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HLA-DMBP28068 NAMPTP1-201ENST00000440465 2514 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HLA-DMBP28068 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 OFD1P9Y-201ENST00000417699 1491 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HLA-DMBP28068 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC000374.1-201ENST00000434698 1745 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HLA-DMBP28068 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
HLA-DMBP28068 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AL589765.3-201ENST00000446084 462 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC079168.1-201ENST00000458741 345 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 CREM-238ENST00000488741 651 ntTSL 2 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 RN7SL447P-201ENST00000494711 245 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC006427.1-201ENST00000514359 712 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 RNU6-941P-201ENST00000516346 108 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 TBCA-207ENST00000520039 157 ntTSL 3 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AP000859.1-201ENST00000525536 307 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AL049779.2-201ENST00000553847 315 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC006349.1-201ENST00000555526 235 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HLA-DMBP28068 OR7E18P-201ENST00000592589 702 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC008814.1-201ENST00000603797 406 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 AL512329.2-201ENST00000607350 548 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 AL451049.1-201ENST00000608672 497 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC136428.4-201ENST00000634254 1155 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 SCN1A-220ENST00000641603 12506 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 USP8-204ENST00000425032 3559 ntTSL 2 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AL731532.2-201ENST00000623542 1953 ntBASIC3.93□□□□□ -1.78
HLA-DMBP28068 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
HLA-DMBP28068 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
HLA-DMBP28068 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC3.92□□□□□ -1.78
HLA-DMBP28068 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HLA-DMBP28068 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC006210.2-201ENST00000367074 1545 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 TET1P1-201ENST00000426627 2301 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HLA-DMBP28068 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC005294.1-201ENST00000355509 281 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 RNU1-149P-201ENST00000390870 161 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 AL390316.1-201ENST00000406279 553 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 U3.32-201ENST00000408116 212 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 SETP10-201ENST00000424368 814 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 LYPLA1P1-201ENST00000434514 622 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AL136455.1-201ENST00000441083 1240 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 GTF3AP5-201ENST00000442645 697 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 BX842559.2-201ENST00000451418 605 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC011225.1-201ENST00000457751 369 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 RNU7-157P-201ENST00000459600 66 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 RN7SL515P-201ENST00000463999 297 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 COPS8P2-201ENST00000473228 627 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 RPS4XP1-201ENST00000482189 787 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 OR10G5P-201ENST00000532733 358 ntBASIC3.92□□□□□ -1.78
HLA-DMBP28068 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HLA-DMBP28068 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC3.92□□□□□ -1.78
HLA-DMBP28068 AC118658.2-201ENST00000618697 459 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms