Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 AC090527.3-201ENST00000619041 548 ntBASIC4.99□□□□□ -1.61
TRIM49D1C9J1S8 AL512356.3-201ENST00000623005 461 ntBASIC4.99□□□□□ -1.61
TRIM49D1C9J1S8 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
TRIM49D1C9J1S8 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
TRIM49D1C9J1S8 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
TRIM49D1C9J1S8 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.99□□□□□ -1.61
TRIM49D1C9J1S8 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 CYP4Z2P-201ENST00000423332 1512 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 RN7SKP114-201ENST00000410327 279 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 CDY17P-201ENST00000414121 1282 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 EIF4HP2-201ENST00000424380 563 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 RPL31P15-201ENST00000449770 338 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 SETP20-201ENST00000457046 852 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 RPL7P51-201ENST00000490532 749 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC010350.1-201ENST00000504908 231 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC073358.1-201ENST00000505671 684 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC024940.3-201ENST00000538551 316 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC104687.2-201ENST00000604442 342 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC007204.2-201ENST00000615022 616 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC127024.6-201ENST00000621598 424 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AL355480.1-201ENST00000629041 99 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 AC136428.4-201ENST00000634254 1155 ntBASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM49D1C9J1S8 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 DDX18P5-201ENST00000534547 1306 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 CASC19-206ENST00000641028 1430 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 AC008549.2-201ENST00000333482 706 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 RNA5SP435-201ENST00000364044 108 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 ATP5HP3-201ENST00000396994 486 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 AC108075.1-201ENST00000424692 529 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 HSPE1P16-201ENST00000426640 348 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 SCAND3P1-201ENST00000439854 1060 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 CYCSP34-201ENST00000458172 304 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 RN7SL184P-201ENST00000488308 297 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 MTATP6P1-201ENST00000514057 681 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 IGLVIV-64-201ENST00000518581 301 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 ICE2P1-201ENST00000512800 1849 ntBASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.97□□□□□ -1.61
TRIM49D1C9J1S8 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
TRIM49D1C9J1S8 KARSP1-201ENST00000451871 1752 ntBASIC4.96□□□□□ -1.61
TRIM49D1C9J1S8 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
TRIM49D1C9J1S8 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
TRIM49D1C9J1S8 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC4.96□□□□□ -1.61
TRIM49D1C9J1S8 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
TRIM49D1C9J1S8 AC116158.1-201ENST00000560231 2129 ntBASIC4.96□□□□□ -1.62
TRIM49D1C9J1S8 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.96□□□□□ -1.62
TRIM49D1C9J1S8 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
TRIM49D1C9J1S8 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
TRIM49D1C9J1S8 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM49D1C9J1S8 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC4.96□□□□□ -1.62
TRIM49D1C9J1S8 AC092642.1-201ENST00000392417 425 ntBASIC4.96□□□□□ -1.62
TRIM49D1C9J1S8 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
TRIM49D1C9J1S8 AL592291.1-201ENST00000403830 352 ntBASIC4.96□□□□□ -1.62
TRIM49D1C9J1S8 RN7SKP125-201ENST00000410481 302 ntBASIC4.96□□□□□ -1.62
TRIM49D1C9J1S8 RGS17P1-201ENST00000423358 553 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms