Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 RNU6-697P-201ENST00000363348 107 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 RNA5SP455-201ENST00000365190 119 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AL353625.1-202ENST00000366273 571 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 SNORA2.3-201ENST00000383920 135 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 ZNF736P10Y-201ENST00000403990 1110 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 RFESDP1-201ENST00000422350 461 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 PSMD10P3-201ENST00000437000 448 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 SNRPFP2-201ENST00000440710 251 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AL157385.1-201ENST00000446973 268 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AC093270.2-201ENST00000486157 792 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AC004453.1-201ENST00000487895 408 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AC093815.1-201ENST00000508637 280 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 RN7SKP260-201ENST00000516907 149 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 RN7SKP147-201ENST00000517154 244 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AC040958.1-201ENST00000561102 201 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AC105254.2-201ENST00000603636 436 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AL021707.7-201ENST00000607991 416 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 AP002799.1-201ENST00000623552 423 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.15□□□□□ -1.58
LHX3Q9UBR4 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.15□□□□□ -1.58
LHX3Q9UBR4 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
LHX3Q9UBR4 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
LHX3Q9UBR4 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
LHX3Q9UBR4 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
LHX3Q9UBR4 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
LHX3Q9UBR4 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.58
LHX3Q9UBR4 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
LHX3Q9UBR4 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 RN7SKP113-201ENST00000363891 295 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AL035079.1-201ENST00000405210 287 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 U3.32-201ENST00000408116 212 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC093162.1-201ENST00000419682 124 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC092647.3-201ENST00000443044 633 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 RPL7AP61-201ENST00000443410 636 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC010350.1-201ENST00000504908 231 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 OR7E128P-201ENST00000532736 1024 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 CASC19-281ENST00000642118 1554 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.59
LHX3Q9UBR4 MTND5P23-201ENST00000430812 1655 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 AC245100.2-201ENST00000454544 1679 ntBASIC5.15□□□□□ -1.59
LHX3Q9UBR4 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 SNORA58B-201ENST00000364259 136 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AC007618.1-201ENST00000366455 732 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 SNORA77-201ENST00000408716 125 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 RN7SKP16-201ENST00000410180 299 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 COX5BP7-201ENST00000414780 274 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 GJA6P-201ENST00000415117 1042 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AC007394.1-201ENST00000421941 531 ntBASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms