Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC88CQ9P219 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 RNA5SP123-201ENST00000363244 119 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 MIR600-201ENST00000385007 98 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 U3.23-201ENST00000391132 200 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 GAPDHP15-201ENST00000398586 975 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 COX6B1P1-201ENST00000415962 213 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 RN7SL610P-201ENST00000463845 291 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 GCSHP4-201ENST00000538792 439 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 AC137768.1-201ENST00000549998 553 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 AC009117.1-201ENST00000563948 554 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 PDCD6IPP2-207ENST00000566321 1069 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.84□□□□□ -1.64
CCDC88CQ9P219 uc_338.7-201ENST00000621834 124 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 AP000550.3-201ENST00000637734 379 ntBASIC4.84□□□□□ -1.64
CCDC88CQ9P219 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 THAP12P4-201ENST00000528321 2266 ntBASIC4.83□□□□□ -1.64
CCDC88CQ9P219 PCNPP4-201ENST00000414817 517 ntBASIC4.83□□□□□ -1.64
CCDC88CQ9P219 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.83□□□□□ -1.64
CCDC88CQ9P219 RPS4XP16-201ENST00000427198 791 ntBASIC4.83□□□□□ -1.64
CCDC88CQ9P219 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 AL691482.1-201ENST00000453255 87 ntBASIC4.83□□□□□ -1.64
CCDC88CQ9P219 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 HMGN2P47-201ENST00000559378 272 ntBASIC4.83□□□□□ -1.64
CCDC88CQ9P219 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 AC011453.2-201ENST00000603737 729 ntBASIC4.83□□□□□ -1.64
CCDC88CQ9P219 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 ZNF733P-202ENST00000444809 1573 ntBASIC4.83□□□□□ -1.64
CCDC88CQ9P219 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC88CQ9P219 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 RN7SKP216-201ENST00000411050 312 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AC007738.1-201ENST00000413892 348 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 SETP9-201ENST00000423837 832 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AC011753.3-201ENST00000443436 406 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 RPL7P61-201ENST00000451721 751 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AC092905.1-201ENST00000467527 949 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 MYL12BP2-201ENST00000503948 512 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 HNRNPRP2-201ENST00000528421 743 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 FAM25E-202ENST00000608562 189 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AL353662.3-201ENST00000625131 237 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AC005261.6-201ENST00000623072 1387 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 THAP12P5-201ENST00000405864 2275 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 RN7SKP149-201ENST00000363008 344 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 RN7SKP213-201ENST00000410746 298 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 RPL23AP56-201ENST00000460778 453 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 COX6B1P2-201ENST00000489624 230 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AC140172.1-201ENST00000502928 141 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 ENPP7P11-201ENST00000505915 627 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AC004980.4-201ENST00000513375 203 ntBASIC4.82□□□□□ -1.64
CCDC88CQ9P219 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC88CQ9P219 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms