Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RIMKLBP2-201ENST00000424737 654 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 RPS6P14-201ENST00000425165 719 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 MORF4L1P7-201ENST00000426038 703 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 MTND6P12-201ENST00000428247 522 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 Z84478.1-201ENST00000438230 1219 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 SDR42E1P3-201ENST00000438345 502 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC245517.2-201ENST00000442890 346 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 RN7SL188P-201ENST00000469842 285 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC015908.1-201ENST00000478739 476 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC021087.2-201ENST00000504656 1203 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC016550.3-201ENST00000515706 767 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 TMEM97P2-201ENST00000517841 403 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 HMGB1P46-201ENST00000520062 610 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 IGLVIV-66-1-201ENST00000521832 460 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC138832.1-201ENST00000522871 556 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 HMGB1P42-201ENST00000532126 553 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC027243.2-201ENST00000602530 724 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC025016.1-201ENST00000616746 682 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC087565.3-203ENST00000641018 837 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC073869.8-201ENST00000641806 335 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC015813.6-201ENST00000624409 5808 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 RPS3AP2-201ENST00000407190 754 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 RN7SKP286-201ENST00000410894 299 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 RPL12P9-201ENST00000412942 488 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 ZNF965P-201ENST00000432501 817 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 ZNF736P6Y-201ENST00000447526 1213 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 VDAC2P4-201ENST00000452925 711 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 CBX1P2-201ENST00000453841 458 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC245028.2-201ENST00000458673 253 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 RPS17P15-201ENST00000475609 349 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC098583.1-201ENST00000480875 255 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 NENFP3-201ENST00000503735 313 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC011411.1-201ENST00000509592 876 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC106872.4-201ENST00000510050 523 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC019227.1-201ENST00000526902 510 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC092451.2-201ENST00000538746 658 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC068993.1-201ENST00000546724 589 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC106785.3-201ENST00000564064 847 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 RN7SL753P-201ENST00000581238 290 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 MIR7853-201ENST00000584820 132 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC011445.2-201ENST00000599274 173 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 BNIP3P19-201ENST00000605397 577 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 RN7SL787P-201ENST00000613000 284 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC126175.1-201ENST00000617041 758 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AL445493.3-201ENST00000619568 477 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC097372.4-201ENST00000625025 466 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 AC099654.6-201ENST00000636487 512 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 OR5AC4P-202ENST00000642086 985 ntBASIC4.7□□□□□ -1.66
NKX3-1Q99801 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms