Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CASC22-202ENST00000628396 802 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 LRP2BP-201ENST00000328559 5157 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 CRYBB2P1-203ENST00000415709 538 ntBASIC4.72□□□□□ -1.65
VPS13AQ96RL7 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 AC084783.1-201ENST00000565846 910 ntBASIC4.72□□□□□ -1.65
VPS13AQ96RL7 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 AC016745.2-201ENST00000608834 3443 ntBASIC4.72□□□□□ -1.65
VPS13AQ96RL7 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 AL672167.1-203ENST00000641299 2975 ntBASIC4.72□□□□□ -1.65
VPS13AQ96RL7 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS13AQ96RL7 NLN-202ENST00000502464 8354 ntTSL 5 BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 RNU1-82P-201ENST00000390851 165 ntBASIC4.71□□□□□ -1.65
VPS13AQ96RL7 U3.28-201ENST00000391249 210 ntBASIC4.71□□□□□ -1.65
VPS13AQ96RL7 PPIAP31-201ENST00000405422 495 ntBASIC4.71□□□□□ -1.65
VPS13AQ96RL7 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 GOT2P5-201ENST00000433995 546 ntBASIC4.71□□□□□ -1.65
VPS13AQ96RL7 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 AC106782.4-201ENST00000568264 210 ntBASIC4.71□□□□□ -1.65
VPS13AQ96RL7 MIR4420-201ENST00000583944 77 ntBASIC4.71□□□□□ -1.65
VPS13AQ96RL7 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 AL158152.1-201ENST00000602652 1435 ntBASIC4.71□□□□□ -1.65
VPS13AQ96RL7 PTPN3-204ENST00000446349 8630 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 TEK-204ENST00000519097 3836 ntTSL 2 BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.71□□□□□ -1.65
VPS13AQ96RL7 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AL161909.1-201ENST00000397390 712 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 NDUFB4P4-201ENST00000404822 243 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 OR8G2P-201ENST00000412796 908 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AL356387.2-201ENST00000422272 243 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 RPL36AP41-201ENST00000493820 306 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 BNIP3P35-201ENST00000604530 490 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 SNORA70.10-201ENST00000384515 134 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AC069157.1-201ENST00000421749 137 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AC079804.1-201ENST00000461922 436 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AC090589.1-201ENST00000473109 362 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 AC096754.1-201ENST00000508904 818 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 BX005214.3-202ENST00000619809 325 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 MAPK10-263ENST00000641052 4307 ntBASIC4.71□□□□□ -1.66
VPS13AQ96RL7 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS13AQ96RL7 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AL672167.1-205ENST00000641112 3080 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 OR2M4-202ENST00000641868 5934 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 RNF10P1-201ENST00000418589 369 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 UQCRBP1-201ENST00000421129 336 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AL500522.2-201ENST00000448562 343 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AC079168.2-201ENST00000453977 416 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 CYCSP1-201ENST00000604815 315 ntBASIC4.7□□□□□ -1.66
VPS13AQ96RL7 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS13AQ96RL7 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 428.7 ms