Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 OR4K15-201ENST00000305051 1216 ntBASIC5.35□□□□□ -1.55
COL4A4P53420 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.35□□□□□ -1.55
COL4A4P53420 AC009506.2-201ENST00000420635 840 ntBASIC5.35□□□□□ -1.55
COL4A4P53420 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.35□□□□□ -1.55
COL4A4P53420 TCEA1P1-201ENST00000449716 880 ntBASIC5.35□□□□□ -1.55
COL4A4P53420 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.35□□□□□ -1.55
COL4A4P53420 CYCSP29-201ENST00000533731 318 ntBASIC5.35□□□□□ -1.55
COL4A4P53420 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.35□□□□□ -1.55
COL4A4P53420 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.35□□□□□ -1.55
COL4A4P53420 AL109766.1-201ENST00000555080 552 ntBASIC5.35□□□□□ -1.55
COL4A4P53420 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.35□□□□□ -1.55
COL4A4P53420 NPM1P5-201ENST00000557228 838 ntBASIC5.35□□□□□ -1.55
COL4A4P53420 BNIP3P33-201ENST00000598912 569 ntBASIC5.35□□□□□ -1.55
COL4A4P53420 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.35□□□□□ -1.55
COL4A4P53420 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.35□□□□□ -1.55
COL4A4P53420 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL4A4P53420 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.35□□□□□ -1.55
COL4A4P53420 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.35□□□□□ -1.55
COL4A4P53420 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.35□□□□□ -1.55
COL4A4P53420 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.35□□□□□ -1.55
COL4A4P53420 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.35□□□□□ -1.55
COL4A4P53420 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL4A4P53420 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.35□□□□□ -1.55
COL4A4P53420 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL4A4P53420 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
COL4A4P53420 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL4A4P53420 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.34□□□□□ -1.55
COL4A4P53420 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
COL4A4P53420 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL4A4P53420 IGKV7-3-201ENST00000357453 298 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 RNA5SP447-201ENST00000363749 119 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 OR8V1P-201ENST00000395193 873 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.34□□□□□ -1.55
COL4A4P53420 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.34□□□□□ -1.55
COL4A4P53420 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.34□□□□□ -1.55
COL4A4P53420 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.34□□□□□ -1.55
COL4A4P53420 CENPIP1-201ENST00000425713 902 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.34□□□□□ -1.55
COL4A4P53420 OR1H1P-201ENST00000448731 937 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.34□□□□□ -1.55
COL4A4P53420 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.34□□□□□ -1.55
COL4A4P53420 SCARNA22-201ENST00000503991 125 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 RNU2-30P-201ENST00000516209 141 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 HMGB1P23-201ENST00000518743 568 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.34□□□□□ -1.55
COL4A4P53420 AC019322.1-201ENST00000571869 389 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 AC020915.5-201ENST00000596836 964 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.34□□□□□ -1.55
COL4A4P53420 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL4A4P53420 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL4A4P53420 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL4A4P53420 CCT8P1-201ENST00000413611 1657 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 ASNSP1-204ENST00000641977 1664 ntBASIC5.34□□□□□ -1.55
COL4A4P53420 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
COL4A4P53420 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.34□□□□□ -1.55
COL4A4P53420 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.34□□□□□ -1.55
COL4A4P53420 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL4A4P53420 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC5.34□□□□□ -1.55
COL4A4P53420 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL4A4P53420 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
COL4A4P53420 AC007618.1-201ENST00000366455 732 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 U3.22-201ENST00000391120 215 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 RPL21P108-201ENST00000413857 481 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 RPL12P34-201ENST00000424532 479 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC5.34□□□□□ -1.56
COL4A4P53420 AC009238.2-201ENST00000431026 355 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.34□□□□□ -1.56
COL4A4P53420 AC000111.2-201ENST00000448200 210 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 AC108751.3-201ENST00000461814 1020 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
COL4A4P53420 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.34□□□□□ -1.56
COL4A4P53420 DPPA3P2-201ENST00000553589 478 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC5.34□□□□□ -1.56
COL4A4P53420 AC116553.2-201ENST00000564203 463 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 AC021483.2-201ENST00000567415 758 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 VN1R85P-201ENST00000601587 426 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.34□□□□□ -1.56
COL4A4P53420 MIR6830-201ENST00000636015 70 ntBASIC5.34□□□□□ -1.56
COL4A4P53420 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL4A4P53420 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
COL4A4P53420 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL4A4P53420 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
COL4A4P53420 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
COL4A4P53420 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC5.33□□□□□ -1.56
COL4A4P53420 MTCO1P15-201ENST00000529569 1526 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.33□□□□□ -1.56
COL4A4P53420 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL4A4P53420 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
COL4A4P53420 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.33□□□□□ -1.56
COL4A4P53420 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL4A4P53420 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL4A4P53420 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL4A4P53420 SNORA2.3-201ENST00000383920 135 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms