Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.02□□□□□ -1.44
BRCA1P38398 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.02□□□□□ -1.44
BRCA1P38398 H3F3BP1-201ENST00000440551 403 ntBASIC6.02□□□□□ -1.44
BRCA1P38398 HMGB1P4-201ENST00000455362 567 ntBASIC6.02□□□□□ -1.44
BRCA1P38398 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC6.02□□□□□ -1.44
BRCA1P38398 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC6.02□□□□□ -1.44
BRCA1P38398 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.44
BRCA1P38398 AC021422.1-201ENST00000621212 473 ntBASIC6.02□□□□□ -1.44
BRCA1P38398 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
BRCA1P38398 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.02□□□□□ -1.45
BRCA1P38398 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 AL122126.1-201ENST00000546905 1318 ntBASIC6.02□□□□□ -1.45
BRCA1P38398 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 AC107068.1-201ENST00000563286 4218 ntBASIC6.02□□□□□ -1.45
BRCA1P38398 OR4C10P-201ENST00000434991 931 ntBASIC6.02□□□□□ -1.45
BRCA1P38398 AC097523.2-201ENST00000435551 652 ntBASIC6.02□□□□□ -1.45
BRCA1P38398 Z95327.1-201ENST00000446082 482 ntBASIC6.02□□□□□ -1.45
BRCA1P38398 MTND2P28-201ENST00000457540 1044 ntBASIC6.02□□□□□ -1.45
BRCA1P38398 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.02□□□□□ -1.45
BRCA1P38398 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC6.02□□□□□ -1.45
BRCA1P38398 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.02□□□□□ -1.45
BRCA1P38398 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.02□□□□□ -1.45
BRCA1P38398 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC6.02□□□□□ -1.45
BRCA1P38398 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.02□□□□□ -1.45
BRCA1P38398 AC245389.1-201ENST00000605141 529 ntBASIC6.02□□□□□ -1.45
BRCA1P38398 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.02□□□□□ -1.45
BRCA1P38398 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.02□□□□□ -1.45
BRCA1P38398 SNX18P3-202ENST00000565670 1750 ntBASIC6.02□□□□□ -1.45
BRCA1P38398 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.02□□□□□ -1.45
BRCA1P38398 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
BRCA1P38398 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
BRCA1P38398 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.02□□□□□ -1.45
BRCA1P38398 NRK-204ENST00000540278 1687 ntTSL 2 BASIC6.01□□□□□ -1.45
BRCA1P38398 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.01□□□□□ -1.45
BRCA1P38398 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
BRCA1P38398 ACTR3BP2-202ENST00000623630 1338 ntBASIC6.01□□□□□ -1.45
BRCA1P38398 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC6.01□□□□□ -1.45
BRCA1P38398 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.01□□□□□ -1.45
BRCA1P38398 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 RPL7P19-201ENST00000469948 618 ntBASIC6.01□□□□□ -1.45
BRCA1P38398 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC6.01□□□□□ -1.45
BRCA1P38398 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.01□□□□□ -1.45
BRCA1P38398 OR4A6P-201ENST00000534364 970 ntBASIC6.01□□□□□ -1.45
BRCA1P38398 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.01□□□□□ -1.45
BRCA1P38398 MIR4420-201ENST00000583944 77 ntBASIC6.01□□□□□ -1.45
BRCA1P38398 AC010424.2-201ENST00000607594 443 ntBASIC6.01□□□□□ -1.45
BRCA1P38398 AC034229.5-201ENST00000624258 185 ntBASIC6.01□□□□□ -1.45
BRCA1P38398 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
BRCA1P38398 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC6.01□□□□□ -1.45
BRCA1P38398 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
BRCA1P38398 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 PTER-201ENST00000298942 3448 ntTSL 5 BASIC6.01□□□□□ -1.45
BRCA1P38398 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC6.01□□□□□ -1.45
BRCA1P38398 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
BRCA1P38398 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC6□□□□□ -1.45
BRCA1P38398 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
BRCA1P38398 MIR208A-201ENST00000362287 71 ntBASIC6□□□□□ -1.45
BRCA1P38398 DNAJA1P3-201ENST00000399417 1194 ntBASIC6□□□□□ -1.45
BRCA1P38398 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC6□□□□□ -1.45
BRCA1P38398 UQCRBP1-201ENST00000421129 336 ntBASIC6□□□□□ -1.45
BRCA1P38398 AL451062.2-201ENST00000427515 271 ntBASIC6□□□□□ -1.45
BRCA1P38398 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6□□□□□ -1.45
BRCA1P38398 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC6□□□□□ -1.45
BRCA1P38398 AC090018.1-201ENST00000434369 367 ntBASIC6□□□□□ -1.45
BRCA1P38398 RPS3AP54-201ENST00000435535 734 ntBASIC6□□□□□ -1.45
BRCA1P38398 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC6□□□□□ -1.45
BRCA1P38398 BX679664.2-201ENST00000439282 283 ntBASIC6□□□□□ -1.45
BRCA1P38398 CYCSP34-201ENST00000458172 304 ntBASIC6□□□□□ -1.45
BRCA1P38398 RPL23AP24-201ENST00000458203 385 ntBASIC6□□□□□ -1.45
BRCA1P38398 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6□□□□□ -1.45
BRCA1P38398 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6□□□□□ -1.45
BRCA1P38398 AC006133.1-201ENST00000617106 264 ntBASIC6□□□□□ -1.45
BRCA1P38398 MIR6839-201ENST00000620425 113 ntBASIC6□□□□□ -1.45
BRCA1P38398 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
BRCA1P38398 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC6□□□□□ -1.45
BRCA1P38398 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
BRCA1P38398 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
BRCA1P38398 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
BRCA1P38398 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
BRCA1P38398 AC063923.1-201ENST00000478982 1619 ntBASIC6□□□□□ -1.45
BRCA1P38398 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6□□□□□ -1.45
BRCA1P38398 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
BRCA1P38398 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms