Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KIAA1217-201ENST00000307544 3281 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 MTIF2-203ENST00000394600 2221 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
COL8A1P27658 RIOK2-201ENST00000283109 3922 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 ZKSCAN8-202ENST00000457389 2071 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 NR3C2-207ENST00000511528 2967 ntTSL 5 BASIC6.53□□□□□ -1.36
COL8A1P27658 PIWIL3-204ENST00000533313 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC6.53□□□□□ -1.36
COL8A1P27658 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC6.53□□□□□ -1.36
COL8A1P27658 RNU6-359P-201ENST00000365466 108 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 RNU6-1297P-201ENST00000384415 104 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC6.53□□□□□ -1.36
COL8A1P27658 U3.31-201ENST00000408113 216 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 RNU2-64P-201ENST00000411315 191 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 HMGB1P11-201ENST00000413899 637 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 PIGX-204ENST00000421265 677 ntTSL 2 BASIC6.53□□□□□ -1.36
COL8A1P27658 YWHAEP5-201ENST00000431545 765 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC6.53□□□□□ -1.36
COL8A1P27658 AL590682.1-201ENST00000437248 344 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.53□□□□□ -1.36
COL8A1P27658 AL136454.1-201ENST00000443181 466 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 AC132479.1-201ENST00000449160 144 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC6.53□□□□□ -1.36
COL8A1P27658 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC6.53□□□□□ -1.36
COL8A1P27658 AC021146.1-201ENST00000511202 716 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC6.53□□□□□ -1.36
COL8A1P27658 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC6.53□□□□□ -1.36
COL8A1P27658 SCARNA18.2-201ENST00000516882 84 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 Y_RNA.718-201ENST00000517110 102 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC6.53□□□□□ -1.36
COL8A1P27658 OR4A7P-201ENST00000531463 910 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 OR5B19P-201ENST00000531766 928 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 AP000889.2-201ENST00000532684 490 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC6.53□□□□□ -1.36
COL8A1P27658 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC6.53□□□□□ -1.36
COL8A1P27658 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC6.53□□□□□ -1.36
COL8A1P27658 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC6.53□□□□□ -1.36
COL8A1P27658 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC6.53□□□□□ -1.36
COL8A1P27658 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC6.53□□□□□ -1.36
COL8A1P27658 AC018462.2-201ENST00000605375 395 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 CUX2P1-201ENST00000606426 298 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 AC011816.2-201ENST00000607089 556 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 AC084781.2-201ENST00000615568 161 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.53□□□□□ -1.36
COL8A1P27658 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC6.53□□□□□ -1.36
COL8A1P27658 MIR1910-201ENST00000636955 80 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 AL356585.10-201ENST00000641883 123 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC6.53□□□□□ -1.36
COL8A1P27658 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC6.53□□□□□ -1.36
COL8A1P27658 EHF-201ENST00000257831 3150 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC6.53□□□□□ -1.36
COL8A1P27658 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 RND3-202ENST00000375734 2777 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 ODF2-220ENST00000604420 3030 ntTSL 2 BASIC6.53□□□□□ -1.36
COL8A1P27658 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC6.53□□□□□ -1.36
COL8A1P27658 EFTUD1P2-201ENST00000514817 1603 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 OPALIN-205ENST00000536387 3392 ntTSL 3 BASIC6.53□□□□□ -1.36
COL8A1P27658 AC092725.2-201ENST00000567658 1389 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 DNAH9-215ENST00000608377 3147 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 ERAP2-201ENST00000379904 3219 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 TMEM182-203ENST00000412401 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL8A1P27658 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 CNTN4-201ENST00000397459 2322 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 AC008498.2-201ENST00000624033 2322 ntBASIC6.53□□□□□ -1.36
COL8A1P27658 SORBS1-208ENST00000371241 2055 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
COL8A1P27658 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.36
COL8A1P27658 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.36
COL8A1P27658 AFF1-211ENST00000544085 3644 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.36
COL8A1P27658 LINC02128-205ENST00000641755 1334 ntBASIC6.52□□□□□ -1.37
COL8A1P27658 ZNF438-202ENST00000361310 3144 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL8A1P27658 PRSS51-203ENST00000636217 2255 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
COL8A1P27658 LINC01358-211ENST00000635571 1687 ntTSL 5 BASIC6.52□□□□□ -1.37
COL8A1P27658 NR1I3-202ENST00000367980 1403 ntTSL 5 BASIC6.52□□□□□ -1.37
COL8A1P27658 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
COL8A1P27658 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL8A1P27658 AL136985.3-201ENST00000637377 2219 ntTSL 5 BASIC6.52□□□□□ -1.37
COL8A1P27658 PDIK1L-201ENST00000374269 2566 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL8A1P27658 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL8A1P27658 RNU1-65P-201ENST00000363919 148 ntBASIC6.52□□□□□ -1.37
COL8A1P27658 Y_RNA.197-201ENST00000364004 102 ntBASIC6.52□□□□□ -1.37
COL8A1P27658 RNY4P34-201ENST00000364779 95 ntBASIC6.52□□□□□ -1.37
COL8A1P27658 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL8A1P27658 RNU6-723P-201ENST00000383973 107 ntBASIC6.52□□□□□ -1.37
COL8A1P27658 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL8A1P27658 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL8A1P27658 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL8A1P27658 MTCO2P33-201ENST00000402100 465 ntBASIC6.52□□□□□ -1.37
COL8A1P27658 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
COL8A1P27658 MIR1272-201ENST00000408106 129 ntBASIC6.52□□□□□ -1.37
COL8A1P27658 RNU6-985P-201ENST00000410182 104 ntBASIC6.52□□□□□ -1.37
COL8A1P27658 RN7SKP127-201ENST00000410443 354 ntBASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms