Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC4.9□□□□□ -1.62
HOXD4P09016 AC131971.1-201ENST00000332881 1482 ntBASIC4.9□□□□□ -1.62
HOXD4P09016 CR382285.2-201ENST00000624662 1495 ntBASIC4.9□□□□□ -1.62
HOXD4P09016 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
HOXD4P09016 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
HOXD4P09016 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
HOXD4P09016 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 AL121886.1-201ENST00000358609 435 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 UBBP2-201ENST00000376781 231 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 RNA5SP339-201ENST00000390987 122 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 OR10T1P-201ENST00000424327 947 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 PRUNEP1-201ENST00000425846 705 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 AC092447.2-201ENST00000435487 669 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 RPS26P41-201ENST00000450370 284 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HOXD4P09016 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXD4P09016 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC137627.1-201ENST00000545761 289 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 SNRPGP1-201ENST00000553864 222 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC005341.1-201ENST00000571086 708 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 MIR4646-201ENST00000580775 63 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXD4P09016 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC087763.1-201ENST00000603391 286 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC4.9□□□□□ -1.63
HOXD4P09016 AC126915.2-201ENST00000610957 190 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 Mico1.1-201ENST00000611698 204 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 AL049539.1-201ENST00000611964 459 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXD4P09016 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXD4P09016 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC4.9□□□□□ -1.63
HOXD4P09016 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXD4P09016 ZNF652P1-201ENST00000442420 1309 ntBASIC4.9□□□□□ -1.63
HOXD4P09016 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
HOXD4P09016 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
HOXD4P09016 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXD4P09016 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
HOXD4P09016 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXD4P09016 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
HOXD4P09016 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.9□□□□□ -1.63
HOXD4P09016 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
HOXD4P09016 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
HOXD4P09016 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.89□□□□□ -1.63
HOXD4P09016 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXD4P09016 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.89□□□□□ -1.63
HOXD4P09016 RPL23P2-201ENST00000320371 421 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 RN7SKP115-201ENST00000363177 317 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXD4P09016 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
HOXD4P09016 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
HOXD4P09016 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 SRSF1P1-201ENST00000424058 520 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AC108075.1-201ENST00000424692 529 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AL590762.4-201ENST00000425885 253 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 NIPA2P1-201ENST00000426223 976 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXD4P09016 H2AFZP6-201ENST00000444403 394 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 GAPDHP25-201ENST00000447061 1001 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AC091685.2-201ENST00000454924 864 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 OR52A4P-202ENST00000481634 799 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 RPL7P40-201ENST00000481703 745 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AC093890.1-201ENST00000502554 540 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 SNRPCP2-201ENST00000504370 475 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AP001960.1-201ENST00000506494 658 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXD4P09016 AC113398.2-201ENST00000507630 558 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC4.89□□□□□ -1.63
HOXD4P09016 RN7SKP253-201ENST00000516424 309 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 SNORD116-30-201ENST00000516468 85 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC4.89□□□□□ -1.63
HOXD4P09016 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXD4P09016 AC095055.1-201ENST00000603472 1113 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AL118508.4-201ENST00000624142 1176 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 AC073342.3-201ENST00000624211 193 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXD4P09016 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXD4P09016 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.89□□□□□ -1.63
HOXD4P09016 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HOXD4P09016 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms