Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS4BO75351 REG1CP-206ENST00000447469 496 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 PPIAP7-201ENST00000454070 489 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS4BO75351 AC092155.2-201ENST00000454675 477 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 RPL6P9-201ENST00000466502 859 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS4BO75351 AC087672.1-201ENST00000479876 766 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS4BO75351 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS4BO75351 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS4BO75351 AL136038.1-201ENST00000497246 351 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 RPL21P131-201ENST00000497298 483 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AC105420.1-201ENST00000504389 582 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AC093752.1-206ENST00000511823 336 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 RNA5SP206-201ENST00000516703 121 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS4BO75351 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS4BO75351 MAL2-205ENST00000521048 575 ntTSL 4 BASIC5.8□□□□□ -1.48
VPS4BO75351 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS4BO75351 AP000620.1-201ENST00000527147 504 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS4BO75351 AP001804.2-201ENST00000533932 910 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS4BO75351 AC079600.1-201ENST00000550326 297 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS4BO75351 ZNF971P-201ENST00000562068 1249 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AC009097.3-201ENST00000563557 1018 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS4BO75351 AC009962.1-201ENST00000567327 3813 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 MTND3P13-201ENST00000574391 343 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS4BO75351 CCDC58P3-201ENST00000590792 430 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AC068020.1-201ENST00000594215 661 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AC130352.1-201ENST00000602979 661 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AC013444.2-201ENST00000603317 787 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS4BO75351 AC092954.1-201ENST00000609121 445 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS4BO75351 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS4BO75351 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS4BO75351 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS4BO75351 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS4BO75351 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS4BO75351 AC123769.1-201ENST00000530992 3192 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
VPS4BO75351 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS4BO75351 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS4BO75351 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS4BO75351 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
VPS4BO75351 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS4BO75351 BCORP1-203ENST00000513194 5093 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 AL354854.1-201ENST00000455940 1363 ntBASIC5.8□□□□□ -1.48
VPS4BO75351 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS4BO75351 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS4BO75351 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS4BO75351 RNU6-236P-201ENST00000363886 106 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 U3.10-201ENST00000364459 214 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS4BO75351 MIR513B-201ENST00000385136 84 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 RN7SKP278-201ENST00000410504 342 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 RN7SKP97-201ENST00000410966 333 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 AL034379.1-201ENST00000423216 253 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VPS4BO75351 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS4BO75351 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS4BO75351 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC5.79□□□□□ -1.48
VPS4BO75351 AL096803.2-201ENST00000450032 677 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 SDC4P-201ENST00000453285 601 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS4BO75351 AL603882.1-201ENST00000463059 681 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 RN7SL273P-201ENST00000481561 299 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 RN7SL284P-201ENST00000498823 275 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AC025459.1-201ENST00000504072 156 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS4BO75351 GLUD1P3-202ENST00000508551 200 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AC105313.1-201ENST00000509121 353 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 RNU6-1028P-201ENST00000517164 93 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS4BO75351 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 AC078899.1-201ENST00000521432 1185 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AC112191.2-201ENST00000522428 333 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS4BO75351 OR8Q1P-201ENST00000526467 655 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 OR8I1P-201ENST00000529291 931 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 OR7E128P-201ENST00000532736 1024 ntBASIC5.79□□□□□ -1.48
VPS4BO75351 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS4BO75351 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms