Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 CASC19-260ENST00000641828 2001 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 RNU1-43P-201ENST00000365052 165 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AL607077.1-201ENST00000401718 499 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AL009179.1-201ENST00000406085 265 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 DUTP5-201ENST00000406790 469 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 RNF10P1-201ENST00000418589 369 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 RPL23AP4-201ENST00000427757 463 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 MTCO1P57-201ENST00000432182 261 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 ELOCP3-201ENST00000439303 348 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 DNAJB5P1-201ENST00000454004 806 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 CEACAMP10-202ENST00000495431 496 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 HMGB1P44-201ENST00000508597 572 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 IGLV3-24-201ENST00000517477 197 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC087888.1-201ENST00000550884 1254 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 H3F3BP2-201ENST00000583907 357 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC011447.4-201ENST00000587562 111 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC084373.1-201ENST00000603311 235 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC006363.1-201ENST00000603806 463 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC005084.1-201ENST00000605160 304 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AL445528.2-201ENST00000620582 470 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC114947.2-201ENST00000565748 2125 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 PWAR1-201ENST00000624188 2414 ntBASIC5.32□□□□□ -1.56
PCDHGA1Q9Y5H4 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 MT-RNR2-201ENST00000387347 1559 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 SOCS5P3-201ENST00000425115 1576 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 SNORA17.1-201ENST00000362945 126 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AL035419.1-201ENST00000397037 564 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 CHMP1B2P-201ENST00000399581 597 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AL591363.1-201ENST00000450091 483 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AL133244.1-201ENST00000456007 258 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AC007686.1-201ENST00000488511 463 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AL671862.1-201ENST00000515851 349 ntBASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.31□□□□□ -1.56
PCDHGA1Q9Y5H4 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms