Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AL390316.1-201ENST00000406279 553 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 RAB9AP4-201ENST00000415230 609 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC079809.1-201ENST00000415468 276 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 PRPF38AP1-201ENST00000451976 933 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 OR52E3P-201ENST00000452083 936 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 CBX1P2-201ENST00000453841 458 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 HMGN1P8-201ENST00000463578 288 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 RPL7AP6-201ENST00000477943 801 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC013701.1-201ENST00000522657 465 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC051619.2-201ENST00000559063 397 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC087763.1-201ENST00000603391 286 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC211433.2-201ENST00000608433 387 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 MIR7155-201ENST00000615925 56 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 OR8G7P-201ENST00000616658 848 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AP000550.3-201ENST00000637734 379 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 AC109446.4-201ENST00000623235 2755 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 NXF4-202ENST00000416098 1465 ntBASIC5.18□□□□□ -1.58
LHX3Q9UBR4 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LHX3Q9UBR4 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 RNA5SP305-201ENST00000362665 119 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 RNU4-4P-201ENST00000364588 130 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AL645927.1-201ENST00000396783 406 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AL161722.1-201ENST00000446972 1032 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 NDUFA5P8-201ENST00000449019 346 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 RN7SL443P-201ENST00000464331 290 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 HMGN2P25-201ENST00000486956 268 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC005412.2-201ENST00000492004 341 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC147055.3-201ENST00000510547 851 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC110775.1-201ENST00000513721 462 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 RN7SKP66-201ENST00000516681 231 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC022784.5-201ENST00000522241 437 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC008126.1-201ENST00000549019 480 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AL121839.1-201ENST00000556233 1185 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 MIR4691-201ENST00000583764 85 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC117490.2-201ENST00000610042 594 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC093799.2-201ENST00000610062 578 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC068870.2-201ENST00000620635 389 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AC091932.2-201ENST00000623014 291 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 HSPA8P18-201ENST00000439846 1928 ntBASIC5.17□□□□□ -1.58
LHX3Q9UBR4 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.17□□□□□ -1.58
LHX3Q9UBR4 CASC19-221ENST00000641309 1382 ntBASIC5.16□□□□□ -1.58
LHX3Q9UBR4 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LHX3Q9UBR4 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 166.5 ms