Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SRRM1P3-201ENST00000426911 2678 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HPS3Q969F9 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.28□□□□□ -1.4
HPS3Q969F9 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.28□□□□□ -1.4
HPS3Q969F9 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.28□□□□□ -1.4
HPS3Q969F9 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.28□□□□□ -1.4
HPS3Q969F9 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.28□□□□□ -1.4
HPS3Q969F9 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HPS3Q969F9 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HPS3Q969F9 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HPS3Q969F9 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HPS3Q969F9 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HPS3Q969F9 AC023490.2-201ENST00000359859 470 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 RNA5SP394-201ENST00000364216 119 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 RNU4-31P-201ENST00000384211 141 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 RNU6-298P-201ENST00000390888 96 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 HMGB1P20-201ENST00000402555 677 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC6.28□□□□□ -1.4
HPS3Q969F9 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.28□□□□□ -1.4
HPS3Q969F9 IPPKP1-201ENST00000422501 768 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 VN1R21P-201ENST00000426703 765 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 USP12PY-201ENST00000427677 1064 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC6.28□□□□□ -1.4
HPS3Q969F9 RPS29P14-201ENST00000431518 171 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 AL035458.1-201ENST00000433096 585 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 RPS7P2-201ENST00000435134 607 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 AC092447.2-201ENST00000435487 669 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 RRM2P4-201ENST00000441721 562 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC6.28□□□□□ -1.4
HPS3Q969F9 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC6.28□□□□□ -1.4
HPS3Q969F9 HNRNPDLP3-201ENST00000456745 380 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 RPS23P2-201ENST00000463671 415 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 OR2A1-AS1-202ENST00000467944 422 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 RN7SL570P-201ENST00000484405 292 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.28□□□□□ -1.4
HPS3Q969F9 AC025459.1-201ENST00000504072 156 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 DUTP7-201ENST00000507982 486 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC6.28□□□□□ -1.4
HPS3Q969F9 GAPDHP62-201ENST00000515313 990 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 IGLVIV-64-201ENST00000518581 301 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC6.28□□□□□ -1.4
HPS3Q969F9 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC6.28□□□□□ -1.4
HPS3Q969F9 MRPS16P1-201ENST00000523462 412 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 AP003717.3-201ENST00000544832 1180 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC6.28□□□□□ -1.4
HPS3Q969F9 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.28□□□□□ -1.4
HPS3Q969F9 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.28□□□□□ -1.4
HPS3Q969F9 AL096712.1-201ENST00000614561 159 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
HPS3Q969F9 RN7SL544P-201ENST00000617232 284 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 RN7SL763P-201ENST00000620922 284 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC6.28□□□□□ -1.4
HPS3Q969F9 MIR4302-201ENST00000638058 60 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HPS3Q969F9 AC114774.1-201ENST00000507410 1770 ntBASIC6.28□□□□□ -1.4
HPS3Q969F9 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
HPS3Q969F9 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HPS3Q969F9 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HPS3Q969F9 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.4
HPS3Q969F9 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HPS3Q969F9 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
HPS3Q969F9 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.27□□□□□ -1.41
HPS3Q969F9 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HPS3Q969F9 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HPS3Q969F9 AC025470.1-201ENST00000510053 2032 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.27□□□□□ -1.41
HPS3Q969F9 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HPS3Q969F9 GAPDHP24-201ENST00000328713 983 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
HPS3Q969F9 RNA5SP30-201ENST00000365552 115 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
HPS3Q969F9 OR7E101P-201ENST00000400428 513 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC6.27□□□□□ -1.41
HPS3Q969F9 AK4P4-201ENST00000419465 646 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 HMGB3P10-201ENST00000434734 572 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.27□□□□□ -1.41
HPS3Q969F9 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HPS3Q969F9 ARF4P4-201ENST00000439608 520 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.27□□□□□ -1.41
HPS3Q969F9 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.27□□□□□ -1.41
HPS3Q969F9 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HPS3Q969F9 AC098826.2-201ENST00000452011 651 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 MEMO1P4-201ENST00000453590 386 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC6.27□□□□□ -1.41
HPS3Q969F9 TPT1P1-201ENST00000458495 518 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 AC021205.1-201ENST00000468797 348 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 HMGB1P38-201ENST00000490557 577 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.27□□□□□ -1.41
HPS3Q969F9 RN7SL284P-201ENST00000498823 275 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 NENFP3-201ENST00000503735 313 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 AC010374.1-201ENST00000503762 1237 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.27□□□□□ -1.41
HPS3Q969F9 SNORA31.13-201ENST00000516624 135 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 RNU6-1308P-201ENST00000516817 103 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 AC013701.1-201ENST00000522657 465 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 MAL2-207ENST00000522828 603 ntTSL 3 BASIC6.27□□□□□ -1.41
HPS3Q969F9 AC136777.2-201ENST00000522979 358 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.27□□□□□ -1.41
HPS3Q969F9 CYB5AP5-201ENST00000549779 389 ntBASIC6.27□□□□□ -1.41
HPS3Q969F9 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms