Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 ZNF544-206ENST00000596652 2818 ntAPPRIS P3 TSL 1 (best) BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 ZNF544-217ENST00000600220 2837 ntAPPRIS ALT2 TSL 3 BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 AC109780.1-201ENST00000451768 1344 ntBASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 SYCP1-202ENST00000369522 3522 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 MFSD8-218ENST00000641186 4448 ntBASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 ZNF410-205ENST00000442160 2076 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 HDAC9-201ENST00000401921 3254 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 ABCA11P-202ENST00000504019 2110 ntBASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 AC008555.1-201ENST00000561778 2757 ntBASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 LINC00208-201ENST00000304233 2150 ntTSL 2 BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
NPAS3Q8IXF0 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 ZFP42-203ENST00000618147 2338 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 ATP1A4-201ENST00000368081 3839 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 RAPGEF5-201ENST00000344041 6621 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 LINC01204-203ENST00000609127 2900 ntTSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 RNU6-379P-201ENST00000363813 104 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 SNORA68-201ENST00000384437 133 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 SUMO2P13-201ENST00000403109 272 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 ERMN-204ENST00000409925 556 ntTSL 4 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC211486.3-201ENST00000412694 621 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 RPSAP60-201ENST00000415403 880 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 MTCYBP8-201ENST00000422855 651 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC005189.1-201ENST00000431286 310 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 GTF2IP13-201ENST00000438487 386 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 RN7SL180P-201ENST00000466769 294 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 MTATP8P1-201ENST00000467115 207 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 UOX-201ENST00000471089 899 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 PAICSP4-201ENST00000517543 1253 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC024405.1-201ENST00000532521 1042 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 UBE2CP1-201ENST00000557130 554 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 MYL12BP1-201ENST00000569826 507 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC005357.1-201ENST00000588399 301 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC068790.7-201ENST00000602347 528 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 RPS4XP21-201ENST00000603814 750 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC010591.1-201ENST00000603941 649 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 uc_338.5-201ENST00000611839 155 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 RFPL4AP6-201ENST00000616792 846 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 EEF1A1P30-201ENST00000429708 1315 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 NEPNP-201ENST00000404786 1371 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 AC138915.3-201ENST00000562908 1389 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 COL6A4P1-202ENST00000487147 4317 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 HSPA8P11-201ENST00000508840 1898 ntBASIC7.41□□□□□ -1.22
NPAS3Q8IXF0 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 THAP12P7-201ENST00000520248 2290 ntBASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 SALL1P1-201ENST00000438101 3837 ntBASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 CNTRL-212ENST00000613863 2418 ntTSL 5 BASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 DNM1L-207ENST00000452533 4439 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC7.4□□□□□ -1.22
NPAS3Q8IXF0 NPIPB5-209ENST00000517539 3569 ntAPPRIS P2 TSL 5 BASIC7.4□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms