| CNTN3 | Q9P232 | AC011921.2-201 | ENST00000589465 | 152 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC008794.1-201 | ENST00000593063 | 560 nt | TSL 4 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC006262.3-201 | ENST00000597337 | 258 nt | TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL022154.1-201 | ENST00000604698 | 785 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | IMMP1LP1-201 | ENST00000605170 | 488 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC112220.3-201 | ENST00000605502 | 502 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL024498.1-201 | ENST00000606522 | 1100 nt | TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL159169.3-201 | ENST00000608871 | 561 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | U1.34-201 | ENST00000618578 | 162 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SMARCA2-229 | ENST00000634781 | 1106 nt | TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MID1-202 | ENST00000380779 | 6044 nt | APPRIS P1 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AP003175.1-201 | ENST00000641383 | 6658 nt | BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | DCDC1-207 | ENST00000452803 | 1706 nt | TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AF064860.2-201 | ENST00000457325 | 1542 nt | TSL 3 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ARMCX5-202 | ENST00000372742 | 2647 nt | APPRIS P1 TSL 2 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | OR51E2-203 | ENST00000641638 | 2626 nt | APPRIS P1 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SETDB1-205 | ENST00000368969 | 4370 nt | APPRIS P3 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ZNF528-201 | ENST00000360465 | 3978 nt | APPRIS P1 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | PEX13-201 | ENST00000295030 | 4470 nt | APPRIS P1 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SYTL5-201 | ENST00000297875 | 4722 nt | TSL 5 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | NDRG3-202 | ENST00000359675 | 2917 nt | APPRIS ALT1 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | EVI2B-202 | ENST00000577894 | 1597 nt | APPRIS P1 TSL 2 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | INPP5F-208 | ENST00000637174 | 3168 nt | TSL 5 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | LINC01441-201 | ENST00000433766 | 2290 nt | TSL 2 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | HMG20A-202 | ENST00000381714 | 4112 nt | APPRIS P1 TSL 1 (best) BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SULT1C2-205 | ENST00000437390 | 1359 nt | TSL 2 BASIC | 7.2 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | CTAGE5-201 | ENST00000280082 | 2554 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MAPK6PS3-201 | ENST00000403865 | 2162 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SERPINB7-206 | ENST00000540675 | 2193 nt | TSL 2 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SLC26A7-202 | ENST00000309536 | 2656 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | PRUNE1-202 | ENST00000368934 | 2214 nt | TSL 2 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | GABRB2-209 | ENST00000612710 | 2470 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | TNRC6A-202 | ENST00000395799 | 8438 nt | APPRIS P3 TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC074141.1-201 | ENST00000588129 | 2995 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MAPK10-344 | ENST00000641718 | 3746 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | PTPN3-203 | ENST00000412145 | 8765 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | IL1RAP-212 | ENST00000443369 | 2760 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ANK2-212 | ENST00000506722 | 8051 nt | APPRIS ALT2 TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ADAMTS9-201 | ENST00000295903 | 7060 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | DACH2-207 | ENST00000510272 | 1764 nt | TSL 2 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL139352.1-201 | ENST00000255183 | 1001 nt | TSL 2 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | LYZL1-201 | ENST00000375500 | 815 nt | APPRIS P1 TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | RN7SKP188-201 | ENST00000410789 | 317 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MTCO1P17-201 | ENST00000411522 | 491 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | BX284668.3-201 | ENST00000414128 | 882 nt | TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL929472.1-201 | ENST00000417484 | 429 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MRPS21P5-201 | ENST00000417885 | 231 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL121917.1-201 | ENST00000441270 | 893 nt | TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC112653.1-201 | ENST00000443851 | 386 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | LINC01004-201 | ENST00000445184 | 686 nt | TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | HSPE1P22-201 | ENST00000456856 | 327 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | RPS7P10-201 | ENST00000464254 | 603 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | HMGB1P36-201 | ENST00000487709 | 576 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC008957.1-203 | ENST00000508745 | 589 nt | TSL 3 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | RNU6-718P-201 | ENST00000516166 | 105 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | RNU6-1308P-201 | ENST00000516817 | 103 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AP004247.1-201 | ENST00000531556 | 1289 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC127502.1-204 | ENST00000564861 | 618 nt | TSL 3 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC130371.1-204 | ENST00000576197 | 401 nt | TSL 3 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL157938.2-204 | ENST00000589667 | 826 nt | TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL137072.1-201 | ENST00000603444 | 466 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | STARD13-AS-232 | ENST00000609137 | 882 nt | TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC069209.1-201 | ENST00000619282 | 651 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AL356596.1-201 | ENST00000624230 | 379 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC099654.5-201 | ENST00000636479 | 350 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC099654.14-201 | ENST00000638599 | 341 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | KAT6B-203 | ENST00000372714 | 5892 nt | APPRIS ALT2 TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | G6PC-201 | ENST00000253801 | 3096 nt | APPRIS P1 TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | DPYD-202 | ENST00000370192 | 4412 nt | APPRIS P1 TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | HBS1L-212 | ENST00000527578 | 2618 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | PROX1-AS1-202 | ENST00000433082 | 5266 nt | TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | LINC01205-201 | ENST00000489670 | 1331 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | DEFB132-201 | ENST00000382376 | 2121 nt | APPRIS P1 TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AMY2A-204 | ENST00000622339 | 1862 nt | APPRIS P1 TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MAPK10-270 | ENST00000641102 | 3538 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | FAM26D-201 | ENST00000368596 | 1353 nt | APPRIS P1 TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MLF1-208 | ENST00000478894 | 1372 nt | TSL 2 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | MTCO1P6-201 | ENST00000481192 | 1384 nt | BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ZNF215-205 | ENST00000529903 | 1396 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | NUMB-201 | ENST00000355058 | 3342 nt | APPRIS ALT1 TSL 5 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ITPR1-205 | ENST00000456211 | 9717 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ATF7IP2-203 | ENST00000396559 | 3641 nt | TSL 2 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | BABAM2-203 | ENST00000361704 | 1686 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | NOSTRIN-209 | ENST00000458381 | 2535 nt | TSL 2 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ZNF211-202 | ENST00000254182 | 1959 nt | TSL 2 BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | TMTC2-204 | ENST00000549919 | 6211 nt | TSL 1 (best) BASIC | 7.19 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | AC068733.2-201 | ENST00000605434 | 1418 nt | BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ETV1-201 | ENST00000242066 | 6348 nt | TSL 5 BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | NLRP13-202 | ENST00000588751 | 3533 nt | APPRIS ALT2 TSL 5 BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | EMB-205 | ENST00000514111 | 1475 nt | APPRIS ALT2 TSL 2 BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | PRND-201 | ENST00000305817 | 3980 nt | APPRIS P1 TSL 1 (best) BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | PHLDB2-202 | ENST00000393925 | 5543 nt | APPRIS P1 TSL 1 (best) BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ARHGAP21-201 | ENST00000320481 | 4343 nt | TSL 5 BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | ACACA-226 | ENST00000612895 | 9624 nt | TSL 5 BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | SENP1-201 | ENST00000448372 | 4679 nt | APPRIS P2 TSL 1 (best) BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | VCAN-202 | ENST00000342785 | 7154 nt | TSL 1 (best) BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | KCNAB1-212 | ENST00000490337 | 3122 nt | TSL 1 (best) BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | OR10J6P-201 | ENST00000289731 | 930 nt | BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | COX7B2-201 | ENST00000355591 | 542 nt | APPRIS P2 TSL 1 (best) BASIC | 7.18 | □□□□□ -1.26 | | |
| CNTN3 | Q9P232 | RNU6-543P-201 | ENST00000362576 | 108 nt | BASIC | 7.18 | □□□□□ -1.26 | | |