Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MIR2117-201ENST00000516780 80 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 LSM3P2-201ENST00000551246 273 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC067805.1-201ENST00000559344 470 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC018552.3-201ENST00000567416 561 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 AP001496.3-201ENST00000580230 913 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 PSMA6P4-201ENST00000603247 718 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 MIR6133-201ENST00000617057 108 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VMP1Q96GC9 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VMP1Q96GC9 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VMP1Q96GC9 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 MRPL53P1-201ENST00000414323 319 ntBASIC5.42□□□□□ -1.54
VMP1Q96GC9 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.42□□□□□ -1.54
VMP1Q96GC9 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VMP1Q96GC9 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 RPL31P15-201ENST00000449770 338 ntBASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AL157777.1-201ENST00000468100 304 ntBASIC5.42□□□□□ -1.54
VMP1Q96GC9 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VMP1Q96GC9 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC010627.1-201ENST00000503819 1294 ntBASIC5.42□□□□□ -1.54
VMP1Q96GC9 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 RNU6-760P-201ENST00000516078 97 ntBASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 PDCD5P1-201ENST00000543528 309 ntBASIC5.42□□□□□ -1.54
VMP1Q96GC9 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC022884.3-201ENST00000579571 248 ntBASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VMP1Q96GC9 AC074276.2-201ENST00000619891 348 ntBASIC5.42□□□□□ -1.54
VMP1Q96GC9 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
VMP1Q96GC9 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VMP1Q96GC9 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
VMP1Q96GC9 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.42□□□□□ -1.54
VMP1Q96GC9 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VMP1Q96GC9 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
VMP1Q96GC9 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VMP1Q96GC9 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
VMP1Q96GC9 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
VMP1Q96GC9 AC007996.1-201ENST00000620414 2821 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 AC009229.4-201ENST00000623854 1947 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VMP1Q96GC9 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VMP1Q96GC9 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 RNA5SP435-201ENST00000364044 108 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VMP1Q96GC9 RNU6-244P-201ENST00000391028 104 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 AL031985.1-201ENST00000392713 418 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VMP1Q96GC9 AL589655.1-201ENST00000405398 482 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 RNA5SP487-201ENST00000410186 122 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 TRGV6-201ENST00000417928 299 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.41□□□□□ -1.54
VMP1Q96GC9 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.41□□□□□ -1.54
VMP1Q96GC9 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.41□□□□□ -1.54
VMP1Q96GC9 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
VMP1Q96GC9 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.41□□□□□ -1.54
VMP1Q96GC9 AL358876.1-201ENST00000453364 1075 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 RPL12P39-201ENST00000455456 496 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 NXT1P1-201ENST00000458481 316 ntBASIC5.41□□□□□ -1.54
VMP1Q96GC9 AC022215.1-201ENST00000481770 362 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms