Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AC023141.8-201ENST00000442554 208 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 USP9YP17-201ENST00000444617 696 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AP006222.1-205ENST00000450734 457 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 FRG2FP-204ENST00000453982 852 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AL157777.1-201ENST00000468100 304 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AC006539.1-201ENST00000481419 501 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 PPIAP19-201ENST00000486414 492 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AC093534.1-201ENST00000504977 132 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 DUXAP5-201ENST00000529668 529 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 PCNAP4-201ENST00000532690 730 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AC023538.1-201ENST00000534576 736 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 VBP1-203ENST00000535916 944 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AL121594.2-201ENST00000541658 472 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AL049870.4-201ENST00000555741 486 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 FAM106CP-201ENST00000582212 507 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 Z99289.3-201ENST00000605586 594 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AL159169.2-201ENST00000610061 1269 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AC022079.2-201ENST00000619739 566 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 MTND2P41-201ENST00000637599 773 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 KYNUP3-201ENST00000574386 1341 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AP004607.3-201ENST00000530354 3915 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC027088.4-201ENST00000611559 1947 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC012078.1-201ENST00000405035 1646 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 RN7SKP81-201ENST00000365603 331 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 SNORA17A-201ENST00000391185 133 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 ATF1P1-201ENST00000406040 927 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC245060.4-201ENST00000413293 1121 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 USP9YP21-201ENST00000420603 432 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AL035660.1-201ENST00000422041 222 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC006065.1-201ENST00000422539 802 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC093422.3-201ENST00000428506 305 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 MTCO2P20-201ENST00000437339 673 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 Z77249.1-201ENST00000444622 1175 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 NDUFAF4P2-201ENST00000445374 520 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 RPL36AP39-201ENST00000445859 318 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC008280.2-201ENST00000455473 307 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC004129.2-201ENST00000457229 287 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 RNU1-88P-201ENST00000459274 128 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC025459.1-201ENST00000504072 156 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC087888.1-201ENST00000550884 1254 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC091078.2-201ENST00000557145 559 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 ZNF322P1-201ENST00000568013 1209 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AL163952.1-202ENST00000569625 600 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 NIFKP6-201ENST00000598115 845 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 127.8 ms