Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AC096553.1-201ENST00000605169 829 ntBASIC4.03□□□□□ -1.76
HIST1H1AQ02539 AL353600.1-201ENST00000608148 251 ntBASIC4.03□□□□□ -1.76
HIST1H1AQ02539 RN7SL787P-201ENST00000613000 284 ntBASIC4.03□□□□□ -1.76
HIST1H1AQ02539 AC037198.3-201ENST00000616754 526 ntBASIC4.03□□□□□ -1.76
HIST1H1AQ02539 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
HIST1H1AQ02539 AC135068.5-201ENST00000624197 983 ntBASIC4.03□□□□□ -1.76
HIST1H1AQ02539 AC007683.2-201ENST00000624681 714 ntBASIC4.03□□□□□ -1.76
HIST1H1AQ02539 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.03□□□□□ -1.76
HIST1H1AQ02539 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HIST1H1AQ02539 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HIST1H1AQ02539 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HIST1H1AQ02539 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HIST1H1AQ02539 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.03□□□□□ -1.76
HIST1H1AQ02539 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HIST1H1AQ02539 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 RNA5SP122-201ENST00000384457 108 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 RNA5SP284-201ENST00000384547 118 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC013442.1-201ENST00000397347 228 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 RPS24P12-201ENST00000402084 394 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 MARK2P12-201ENST00000420129 585 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 PTP4A1P1-201ENST00000420539 515 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC093155.2-201ENST00000420734 937 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 HMGB3P9-201ENST00000441799 583 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 MTND6P5-201ENST00000448266 512 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 RN7SKP70-201ENST00000516655 271 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 NRBF2P4-201ENST00000520874 850 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 EIF4A2P5-201ENST00000529914 499 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC005341.1-201ENST00000571086 708 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 RN7SL356P-201ENST00000582228 248 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 MRO-208ENST00000588444 866 ntTSL 3 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AL359742.1-201ENST00000622497 540 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC132068.1-201ENST00000623805 459 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AP003400.3-201ENST00000624904 346 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC245100.2-201ENST00000454544 1679 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 LINC01109-201ENST00000603837 3081 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.02□□□□□ -1.77
HIST1H1AQ02539 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.02□□□□□ -1.77
HIST1H1AQ02539 AC107027.3-201ENST00000565095 3473 ntBASIC4.01□□□□□ -1.77
HIST1H1AQ02539 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 RNA5SP319-201ENST00000362768 119 ntBASIC4.01□□□□□ -1.77
HIST1H1AQ02539 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC005522.1-201ENST00000395416 346 ntBASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC013410.1-201ENST00000436223 1232 ntBASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AL136455.1-201ENST00000441083 1240 ntBASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC019185.1-201ENST00000442718 389 ntBASIC4.01□□□□□ -1.77
HIST1H1AQ02539 NPM1P39-201ENST00000449818 867 ntBASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC073358.1-201ENST00000505671 684 ntBASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC138866.2-201ENST00000508650 584 ntBASIC4.01□□□□□ -1.77
HIST1H1AQ02539 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms