Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LIM2P55344 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC4.9□□□□□ -1.63
LIM2P55344 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LIM2P55344 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LIM2P55344 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 CR382285.2-201ENST00000624662 1495 ntBASIC4.89□□□□□ -1.63
LIM2P55344 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 AC004817.4-201ENST00000602396 3625 ntBASIC4.89□□□□□ -1.63
LIM2P55344 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
LIM2P55344 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIM2P55344 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
LIM2P55344 AC007068.1-201ENST00000396690 844 ntBASIC4.89□□□□□ -1.63
LIM2P55344 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
LIM2P55344 RN7SKP126-201ENST00000411143 300 ntBASIC4.89□□□□□ -1.63
LIM2P55344 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.89□□□□□ -1.63
LIM2P55344 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.89□□□□□ -1.63
LIM2P55344 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 AURKAPS1-201ENST00000451805 1212 ntBASIC4.89□□□□□ -1.63
LIM2P55344 RN7SL629P-201ENST00000489622 285 ntBASIC4.89□□□□□ -1.63
LIM2P55344 AC097173.1-201ENST00000505862 819 ntBASIC4.89□□□□□ -1.63
LIM2P55344 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.89□□□□□ -1.63
LIM2P55344 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC4.89□□□□□ -1.63
LIM2P55344 RNA5SP92-201ENST00000516437 110 ntBASIC4.89□□□□□ -1.63
LIM2P55344 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.89□□□□□ -1.63
LIM2P55344 AC025857.1-201ENST00000525252 377 ntBASIC4.89□□□□□ -1.63
LIM2P55344 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC4.89□□□□□ -1.63
LIM2P55344 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC4.89□□□□□ -1.63
LIM2P55344 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.89□□□□□ -1.63
LIM2P55344 OR11J2P-201ENST00000555298 907 ntBASIC4.89□□□□□ -1.63
LIM2P55344 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.89□□□□□ -1.63
LIM2P55344 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.89□□□□□ -1.63
LIM2P55344 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.89□□□□□ -1.63
LIM2P55344 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC4.89□□□□□ -1.63
LIM2P55344 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.89□□□□□ -1.63
LIM2P55344 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.89□□□□□ -1.63
LIM2P55344 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.89□□□□□ -1.63
LIM2P55344 ZNF733P-202ENST00000444809 1573 ntBASIC4.89□□□□□ -1.63
LIM2P55344 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LIM2P55344 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIM2P55344 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.89□□□□□ -1.63
LIM2P55344 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
LIM2P55344 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIM2P55344 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.89□□□□□ -1.63
LIM2P55344 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC4.89□□□□□ -1.63
LIM2P55344 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIM2P55344 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LIM2P55344 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.89□□□□□ -1.63
LIM2P55344 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIM2P55344 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LIM2P55344 PEX12P1-201ENST00000400284 1048 ntBASIC4.88□□□□□ -1.63
LIM2P55344 RN7SKP16-201ENST00000410180 299 ntBASIC4.88□□□□□ -1.63
LIM2P55344 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
LIM2P55344 BX510359.3-201ENST00000422168 306 ntBASIC4.88□□□□□ -1.63
LIM2P55344 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.88□□□□□ -1.63
LIM2P55344 AC009238.2-201ENST00000431026 355 ntBASIC4.88□□□□□ -1.63
LIM2P55344 AC046176.1-201ENST00000435260 1170 ntBASIC4.88□□□□□ -1.63
LIM2P55344 AC020779.1-201ENST00000478757 796 ntBASIC4.88□□□□□ -1.63
LIM2P55344 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.88□□□□□ -1.63
LIM2P55344 SNRPCP2-201ENST00000504370 475 ntBASIC4.88□□□□□ -1.63
LIM2P55344 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.88□□□□□ -1.63
LIM2P55344 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.88□□□□□ -1.63
LIM2P55344 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC4.88□□□□□ -1.63
LIM2P55344 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LIM2P55344 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.88□□□□□ -1.63
LIM2P55344 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.88□□□□□ -1.63
LIM2P55344 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LIM2P55344 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.88□□□□□ -1.63
LIM2P55344 BNIP3P35-201ENST00000604530 490 ntBASIC4.88□□□□□ -1.63
LIM2P55344 AC099494.2-201ENST00000623371 978 ntBASIC4.88□□□□□ -1.63
LIM2P55344 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIM2P55344 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIM2P55344 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LIM2P55344 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
LIM2P55344 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LIM2P55344 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
LIM2P55344 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.88□□□□□ -1.63
LIM2P55344 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.88□□□□□ -1.63
LIM2P55344 CR788268.1-201ENST00000603931 1809 ntBASIC4.88□□□□□ -1.63
LIM2P55344 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIM2P55344 RARSP1-201ENST00000542842 1418 ntBASIC4.88□□□□□ -1.63
LIM2P55344 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIM2P55344 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.87□□□□□ -1.63
LIM2P55344 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.87□□□□□ -1.63
LIM2P55344 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC4.87□□□□□ -1.63
LIM2P55344 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIM2P55344 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.87□□□□□ -1.63
LIM2P55344 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.87□□□□□ -1.63
LIM2P55344 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIM2P55344 AC003985.2-201ENST00000562268 1669 ntBASIC4.87□□□□□ -1.63
LIM2P55344 AL035696.2-201ENST00000407941 709 ntBASIC4.87□□□□□ -1.63
LIM2P55344 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.87□□□□□ -1.63
LIM2P55344 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.87□□□□□ -1.63
LIM2P55344 AC005033.1-201ENST00000428904 813 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms