Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.67□□□□□ -1.66
CDX1P47902 Y_RNA.667-201ENST00000516212 107 ntBASIC4.67□□□□□ -1.66
CDX1P47902 TPM3P3-201ENST00000521343 354 ntBASIC4.67□□□□□ -1.66
CDX1P47902 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC4.67□□□□□ -1.66
CDX1P47902 AP000648.1-201ENST00000529682 397 ntBASIC4.67□□□□□ -1.66
CDX1P47902 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.67□□□□□ -1.66
CDX1P47902 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.67□□□□□ -1.66
CDX1P47902 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.67□□□□□ -1.66
CDX1P47902 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.67□□□□□ -1.66
CDX1P47902 AC090525.3-201ENST00000605601 189 ntBASIC4.67□□□□□ -1.66
CDX1P47902 PPATP2-201ENST00000605635 508 ntBASIC4.67□□□□□ -1.66
CDX1P47902 AL031601.1-201ENST00000605702 394 ntBASIC4.67□□□□□ -1.66
CDX1P47902 AL158211.2-201ENST00000607282 395 ntBASIC4.67□□□□□ -1.66
CDX1P47902 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.67□□□□□ -1.66
CDX1P47902 AC084824.5-201ENST00000612009 413 ntBASIC4.67□□□□□ -1.66
CDX1P47902 MIR6809-201ENST00000612189 116 ntBASIC4.67□□□□□ -1.66
CDX1P47902 AC007342.8-201ENST00000623278 678 ntBASIC4.67□□□□□ -1.66
CDX1P47902 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
CDX1P47902 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 ZNF652P1-201ENST00000442420 1309 ntBASIC4.67□□□□□ -1.66
CDX1P47902 AC027228.2-201ENST00000567141 2154 ntBASIC4.67□□□□□ -1.66
CDX1P47902 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CDX1P47902 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
CDX1P47902 PSG10P-201ENST00000501199 1500 ntBASIC4.67□□□□□ -1.66
CDX1P47902 LARS-201ENST00000274562 2213 ntTSL 2 BASIC4.66□□□□□ -1.66
CDX1P47902 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 NEPNP-201ENST00000404786 1371 ntBASIC4.66□□□□□ -1.66
CDX1P47902 SMG1P4-204ENST00000523028 4131 ntBASIC4.66□□□□□ -1.66
CDX1P47902 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.66□□□□□ -1.66
CDX1P47902 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
CDX1P47902 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.66□□□□□ -1.66
CDX1P47902 RNU6-185P-201ENST00000384421 107 ntBASIC4.66□□□□□ -1.66
CDX1P47902 MIR142-201ENST00000384835 87 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC016739.1-201ENST00000405359 345 ntBASIC4.66□□□□□ -1.66
CDX1P47902 RNA5SP487-201ENST00000410186 122 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC211486.3-201ENST00000412694 621 ntBASIC4.66□□□□□ -1.66
CDX1P47902 RPL35AP3-201ENST00000414680 288 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.66□□□□□ -1.66
CDX1P47902 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.66□□□□□ -1.66
CDX1P47902 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 FO393419.3-201ENST00000428741 282 ntBASIC4.66□□□□□ -1.66
CDX1P47902 RPL34P6-201ENST00000432390 345 ntBASIC4.66□□□□□ -1.66
CDX1P47902 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 NPM1P33-201ENST00000438918 872 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AL512605.1-202ENST00000441919 381 ntBASIC4.66□□□□□ -1.66
CDX1P47902 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.66□□□□□ -1.66
CDX1P47902 AL359955.2-201ENST00000445380 353 ntBASIC4.66□□□□□ -1.66
CDX1P47902 ZNF736P6Y-201ENST00000447526 1213 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC016724.1-201ENST00000453215 421 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.66□□□□□ -1.66
CDX1P47902 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.66□□□□□ -1.66
CDX1P47902 AC093890.1-201ENST00000502554 540 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.66□□□□□ -1.66
CDX1P47902 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 GAPDHP71-201ENST00000511530 1003 ntBASIC4.66□□□□□ -1.66
CDX1P47902 RNA5SP438-201ENST00000516561 112 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.66□□□□□ -1.66
CDX1P47902 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.66□□□□□ -1.66
CDX1P47902 NPM1P47-201ENST00000560843 856 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC4.66□□□□□ -1.66
CDX1P47902 RNU4ATAC-201ENST00000580972 127 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 AP001033.2-201ENST00000609701 1003 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.66□□□□□ -1.66
CDX1P47902 AL121890.2-201ENST00000617644 465 ntBASIC4.66□□□□□ -1.66
CDX1P47902 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
CDX1P47902 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
CDX1P47902 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
CDX1P47902 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.66□□□□□ -1.66
CDX1P47902 OR55B1P-203ENST00000641518 2602 ntBASIC4.66□□□□□ -1.66
CDX1P47902 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 AC027088.4-201ENST00000611559 1947 ntBASIC4.66□□□□□ -1.66
CDX1P47902 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CDX1P47902 TRIM51GP-201ENST00000534741 1350 ntBASIC4.65□□□□□ -1.66
CDX1P47902 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms