Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX2P35548 AC091932.1-201ENST00000569381 427 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX2P35548 AC022662.1-201ENST00000580252 331 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AC005726.4-201ENST00000582858 458 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AC090616.2-202ENST00000584248 222 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AP002906.1-201ENST00000603405 233 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AC009237.15-201ENST00000610252 501 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AC015540.1-201ENST00000615828 501 ntBASIC5.83□□□□□ -1.48
MSX2P35548 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.83□□□□□ -1.48
MSX2P35548 OR8G7P-201ENST00000616658 848 ntBASIC5.83□□□□□ -1.48
MSX2P35548 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
MSX2P35548 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX2P35548 RMST_5.1-201ENST00000618704 126 ntBASIC5.83□□□□□ -1.48
MSX2P35548 AL359740.1-201ENST00000624340 592 ntBASIC5.83□□□□□ -1.48
MSX2P35548 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.83□□□□□ -1.48
MSX2P35548 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.83□□□□□ -1.48
MSX2P35548 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 AC232271.1-201ENST00000602455 2715 ntBASIC5.83□□□□□ -1.48
MSX2P35548 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX2P35548 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.83□□□□□ -1.48
MSX2P35548 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX2P35548 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
MSX2P35548 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 AC111188.2-201ENST00000529697 1387 ntBASIC5.82□□□□□ -1.48
MSX2P35548 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
MSX2P35548 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 RNU6-517P-201ENST00000384362 110 ntBASIC5.82□□□□□ -1.48
MSX2P35548 RPL7P53-201ENST00000421245 739 ntBASIC5.82□□□□□ -1.48
MSX2P35548 C1DP1-201ENST00000426049 402 ntBASIC5.82□□□□□ -1.48
MSX2P35548 AC083862.1-201ENST00000427378 1242 ntBASIC5.82□□□□□ -1.48
MSX2P35548 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 AC092106.2-201ENST00000436597 487 ntBASIC5.82□□□□□ -1.48
MSX2P35548 AC013403.1-201ENST00000436954 263 ntBASIC5.82□□□□□ -1.48
MSX2P35548 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX2P35548 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX2P35548 AC233982.1-201ENST00000451247 436 ntBASIC5.82□□□□□ -1.48
MSX2P35548 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 GTF2IP12-201ENST00000456547 356 ntBASIC5.82□□□□□ -1.48
MSX2P35548 AC019084.1-201ENST00000457337 432 ntBASIC5.82□□□□□ -1.48
MSX2P35548 AC098583.1-201ENST00000480875 255 ntBASIC5.82□□□□□ -1.48
MSX2P35548 NAA50-206ENST00000493454 964 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX2P35548 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX2P35548 NDUFB4P12-201ENST00000513465 390 ntBASIC5.82□□□□□ -1.48
MSX2P35548 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.82□□□□□ -1.48
MSX2P35548 MTCYBP41-201ENST00000528913 1123 ntBASIC5.82□□□□□ -1.48
MSX2P35548 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX2P35548 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 AC009729.1-201ENST00000548873 1133 ntBASIC5.82□□□□□ -1.48
MSX2P35548 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 ACTR3BP3-201ENST00000565577 979 ntBASIC5.82□□□□□ -1.48
MSX2P35548 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX2P35548 AC095057.3-201ENST00000567102 1157 ntBASIC5.82□□□□□ -1.48
MSX2P35548 AC027796.1-201ENST00000575593 512 ntBASIC5.82□□□□□ -1.48
MSX2P35548 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX2P35548 RPL29P33-201ENST00000587474 316 ntBASIC5.82□□□□□ -1.48
MSX2P35548 VN1R90P-201ENST00000595717 726 ntBASIC5.82□□□□□ -1.48
MSX2P35548 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX2P35548 AC004805.3-201ENST00000603178 310 ntBASIC5.82□□□□□ -1.48
MSX2P35548 RPL12P48-201ENST00000605620 304 ntBASIC5.82□□□□□ -1.48
MSX2P35548 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC5.82□□□□□ -1.48
MSX2P35548 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 AL596275.2-207ENST00000641188 675 ntBASIC5.82□□□□□ -1.48
MSX2P35548 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX2P35548 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 AC004656.1-201ENST00000568479 4951 ntBASIC5.82□□□□□ -1.48
MSX2P35548 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX2P35548 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX2P35548 AL359091.1-201ENST00000449048 1734 ntBASIC5.82□□□□□ -1.48
MSX2P35548 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms