Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXC4P09017 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXC4P09017 OR5AZ1P-201ENST00000527448 943 ntBASIC5.08□□□□□ -1.6
HOXC4P09017 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.08□□□□□ -1.6
HOXC4P09017 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC4P09017 AL359219.2-201ENST00000555184 348 ntBASIC5.08□□□□□ -1.6
HOXC4P09017 AC006272.2-201ENST00000594725 163 ntBASIC5.08□□□□□ -1.6
HOXC4P09017 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC4P09017 AC073575.2-201ENST00000614212 627 ntBASIC5.08□□□□□ -1.6
HOXC4P09017 AC091905.4-201ENST00000623432 202 ntBASIC5.08□□□□□ -1.6
HOXC4P09017 AC112694.2-201ENST00000623697 768 ntBASIC5.08□□□□□ -1.6
HOXC4P09017 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC4P09017 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC4P09017 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC4P09017 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC4P09017 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC4P09017 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC4P09017 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
HOXC4P09017 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC4P09017 INTS6P1-201ENST00000504674 2530 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC4P09017 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC4P09017 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC4P09017 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.07□□□□□ -1.6
HOXC4P09017 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC4P09017 AC007996.1-201ENST00000620414 2821 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXC4P09017 CASC19-221ENST00000641309 1382 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 MAPK10-328ENST00000641553 4009 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
HOXC4P09017 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
HOXC4P09017 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC4P09017 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HOXC4P09017 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
HOXC4P09017 SNORA70.6-201ENST00000383934 134 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 RNA5SP241-201ENST00000391326 114 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 Z97832.1-201ENST00000402490 328 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXC4P09017 NACAP7-201ENST00000407371 609 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXC4P09017 GJA6P-201ENST00000415117 1042 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 RBMY2QP-201ENST00000429799 1147 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXC4P09017 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXC4P09017 COX6B1P5-201ENST00000509843 249 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXC4P09017 OR7E128P-201ENST00000532736 1024 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC4P09017 LSM3P2-201ENST00000551246 273 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 PCNPP1-201ENST00000552501 511 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXC4P09017 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.07□□□□□ -1.6
HOXC4P09017 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXC4P09017 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC4P09017 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXC4P09017 AC005084.1-201ENST00000605160 304 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXC4P09017 AP005432.2-201ENST00000608162 586 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXC4P09017 AL049539.1-201ENST00000611964 459 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
HOXC4P09017 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC4P09017 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC4P09017 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC4P09017 AC053481.2-202ENST00000582394 1500 ntBASIC5.07□□□□□ -1.6
HOXC4P09017 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXC4P09017 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
HOXC4P09017 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
HOXC4P09017 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
HOXC4P09017 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
HOXC4P09017 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXC4P09017 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC4P09017 OR1L6-202ENST00000373684 1044 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 MIR937-201ENST00000401271 86 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXC4P09017 RPS26P13-201ENST00000419030 330 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXC4P09017 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXC4P09017 HIGD1AP8-201ENST00000453927 274 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 RPL37AP8-201ENST00000494116 276 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXC4P09017 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXC4P09017 AC098976.1-201ENST00000513014 541 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 AP001922.4-201ENST00000526967 290 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXC4P09017 NMNAT1P1-201ENST00000554095 876 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXC4P09017 AC027216.1-201ENST00000577726 685 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 AC011487.3-201ENST00000593607 453 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 AL627230.1-201ENST00000613077 211 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 AL591926.8-201ENST00000616876 211 ntBASIC5.06□□□□□ -1.6
HOXC4P09017 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXC4P09017 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 175.3 ms