Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AC011503.2-201ENST00000594230 1500 ntBASIC5.23□□□□□ -1.57
LHX3Q9UBR4 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
LHX3Q9UBR4 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AC112255.1-201ENST00000624070 2493 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 RNA5SP507-201ENST00000363603 121 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 MIR105-2-201ENST00000385083 81 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 RPL12P9-201ENST00000412942 488 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 RPL23AP27-201ENST00000415161 451 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AL354766.1-201ENST00000423396 542 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 PTMAP6-201ENST00000439110 327 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 GAPDHP14-201ENST00000450472 937 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 SEPT7P6-201ENST00000469999 1143 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AC097484.1-201ENST00000471148 389 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 RN7SL808P-201ENST00000496066 299 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AC027308.1-201ENST00000517993 110 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AL583832.1-201ENST00000603227 784 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 AC026367.3-201ENST00000619032 590 ntBASIC5.22□□□□□ -1.57
LHX3Q9UBR4 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LHX3Q9UBR4 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
LHX3Q9UBR4 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.57
LHX3Q9UBR4 ADAM24P-201ENST00000398655 2101 ntBASIC5.21□□□□□ -1.57
LHX3Q9UBR4 AP001029.2-203ENST00000589795 4910 ntBASIC5.21□□□□□ -1.57
LHX3Q9UBR4 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.57
LHX3Q9UBR4 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.57
LHX3Q9UBR4 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 RN7SKP114-201ENST00000410327 279 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 RN7SKP213-201ENST00000410746 298 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 BX323845.1-201ENST00000432417 179 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 UBE2V2P3-201ENST00000433562 437 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 AL590399.4-201ENST00000436561 601 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 BX842559.2-201ENST00000451418 605 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 PPP1R11P1-201ENST00000486095 376 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 OR5M14P-201ENST00000506803 618 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 AC016559.2-201ENST00000510759 359 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 AC098976.1-201ENST00000513014 541 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 HMGN2P6-201ENST00000551091 273 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 EIF1AXP2-201ENST00000555940 413 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 AC022884.2-201ENST00000578535 580 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 MRRFP1-201ENST00000435941 1675 ntBASIC5.21□□□□□ -1.58
LHX3Q9UBR4 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LHX3Q9UBR4 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AC240504.1-201ENST00000395709 845 ntBASIC5.2□□□□□ -1.58
LHX3Q9UBR4 AL035696.2-201ENST00000407941 709 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms