Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 RNA5SP284-201ENST00000384547 118 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 MIR937-201ENST00000401271 86 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 Z86062.1-201ENST00000406773 777 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC245060.4-201ENST00000413293 1121 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 SEPT7P8-201ENST00000413308 775 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 RANP4-201ENST00000413361 655 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AL606490.7-201ENST00000433136 191 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 PTP4A1P3-201ENST00000433661 420 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AL390879.1-201ENST00000439143 386 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AL663074.2-201ENST00000440621 479 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AL009048.1-201ENST00000450437 298 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AL445687.2-201ENST00000458156 728 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AL603882.1-201ENST00000463059 681 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 RPS17P15-201ENST00000475609 349 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC093770.1-201ENST00000511559 571 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AL671862.1-201ENST00000515851 349 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 SNORD46.2-201ENST00000516021 102 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC244502.2-201ENST00000543361 851 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AGGF1P9-201ENST00000561884 913 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 DPRXP4-201ENST00000578053 568 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC011492.1-201ENST00000600023 315 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 AC006963.1-201ENST00000624003 1052 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 OR13C1P-202ENST00000641378 2919 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 CR788268.1-201ENST00000603931 1809 ntBASIC5.92□□□□□ -1.46
DKK3Q9UBP4 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.92□□□□□ -1.46
DKK3Q9UBP4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 GAPDHP15-201ENST00000398586 975 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 RNA5SP178-201ENST00000410380 128 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 RNU4-27P-201ENST00000410889 139 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AL158050.1-201ENST00000416077 457 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AK4P4-201ENST00000419465 646 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 XKRYP1-201ENST00000423438 492 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 PTP4A1P7-201ENST00000423476 514 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 MTCO1P51-201ENST00000427672 1060 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 MTND6P12-201ENST00000428247 522 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AC126120.1-201ENST00000431082 470 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 XKRYP2-201ENST00000432915 492 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AC092447.2-201ENST00000435487 669 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 GAPDHP48-201ENST00000436626 961 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 RNFT1P2-201ENST00000443064 757 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.91□□□□□ -1.46
DKK3Q9UBP4 RPL7P61-201ENST00000451721 751 ntBASIC5.91□□□□□ -1.46
DKK3Q9UBP4 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms