Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 BNIP3P31-201ENST00000604515 566 ntBASIC5.74□□□□□ -1.49
EBF3Q9H4W6 AC093783.1-201ENST00000612976 329 ntBASIC5.74□□□□□ -1.49
EBF3Q9H4W6 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.74□□□□□ -1.49
EBF3Q9H4W6 AL162233.1-201ENST00000620014 944 ntBASIC5.74□□□□□ -1.49
EBF3Q9H4W6 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 OR52B5P-202ENST00000641118 1110 ntBASIC5.74□□□□□ -1.49
EBF3Q9H4W6 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
EBF3Q9H4W6 AL034546.1-201ENST00000623740 3693 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 OR4G1P-202ENST00000641173 1788 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AL512283.1-201ENST00000606756 1384 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 RN7SKP185-201ENST00000362813 326 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 RNA5SP335-201ENST00000363817 110 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 NPM1P38-201ENST00000403835 865 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC079809.1-201ENST00000415468 276 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 VN1R21P-201ENST00000426703 765 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 NDUFA5P1-201ENST00000433858 341 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 MAPRE1P3-201ENST00000435438 796 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 FAR2P1-206ENST00000449736 709 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 RSU1P1-201ENST00000453416 441 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 SEPT7P6-201ENST00000469999 1143 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 RN7SL222P-201ENST00000476452 299 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 COX6B1P2-201ENST00000489624 230 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC093801.2-201ENST00000503966 1050 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 Y_RNA.717-201ENST00000517106 92 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC139103.1-201ENST00000534696 1030 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 MTND1P24-201ENST00000552175 861 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 BLZF2P-201ENST00000553776 1130 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 LINC00557-201ENST00000563184 1279 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AL121612.2-201ENST00000612261 482 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC005618.4-201ENST00000625053 554 ntBASIC5.73□□□□□ -1.49
EBF3Q9H4W6 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
EBF3Q9H4W6 LINC01963-201ENST00000562038 3148 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC010266.2-201ENST00000564741 3255 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC005294.1-201ENST00000355509 281 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 RN7SKP145-201ENST00000363291 303 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 RNA5SP91-201ENST00000390902 119 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AL645927.1-201ENST00000396783 406 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AL607077.1-201ENST00000401718 499 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 RPL23AP27-201ENST00000415161 451 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 OR13Z1P-201ENST00000416141 834 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC007064.3-201ENST00000422608 359 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 CRIP1P1-201ENST00000427567 185 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC023271.1-201ENST00000445936 1090 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 OTX2P1-201ENST00000450956 354 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 RPL12P39-201ENST00000455456 496 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 RN7SL329P-201ENST00000467740 299 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC004453.1-201ENST00000487895 408 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC147055.3-201ENST00000510547 851 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 148.8 ms