Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ARAFP1-201ENST00000422172 605 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 IPPKP1-201ENST00000422501 768 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 NPM1P22-201ENST00000427761 952 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 GAPDHP14-201ENST00000450472 937 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 PRPF38AP1-201ENST00000451976 933 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 RPL10P17-201ENST00000453852 316 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 SEPT7P6-201ENST00000469999 1143 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 RN7SL809P-201ENST00000482040 297 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AC138866.2-201ENST00000508650 584 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 EIF3KP3-201ENST00000514461 639 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AC005000.1-201ENST00000536192 288 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 AC060766.1-201ENST00000590824 627 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 MIR6861-201ENST00000618657 64 ntBASIC5.35□□□□□ -1.55
VPS39Q96JC1 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS39Q96JC1 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
VPS39Q96JC1 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 UGT2B26P-201ENST00000508672 1613 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC107027.3-201ENST00000565095 3473 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC022417.1-201ENST00000624768 1303 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 RNA5SP284-201ENST00000384547 118 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 SNORA68.2-201ENST00000391263 128 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 TNPO1P1-201ENST00000423641 1138 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 SRSF1P1-201ENST00000424058 520 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 RPL12P24-201ENST00000474907 486 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 AP004607.2-201ENST00000533949 322 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC078878.1-201ENST00000539832 958 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC040958.1-201ENST00000561102 201 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS39Q96JC1 SNX6P1-201ENST00000601728 1224 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC027243.2-201ENST00000602530 724 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 MIR6839-201ENST00000620425 113 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 AC132068.1-201ENST00000623805 459 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 CU639417.4-201ENST00000623928 207 ntBASIC5.34□□□□□ -1.55
VPS39Q96JC1 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS39Q96JC1 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms