Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 AC245389.2-201ENST00000616023 576 ntBASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 AC242843.1-201ENST00000618702 573 ntBASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 AL445528.2-201ENST00000620582 470 ntBASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 AC068880.4-201ENST00000623082 495 ntBASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 AP003476.1-201ENST00000623984 516 ntBASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 AC073593.1-201ENST00000624500 411 ntBASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 OR8G3P-202ENST00000641572 1255 ntBASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 AC006206.1-201ENST00000544842 3387 ntBASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 ADAM5-202ENST00000399789 1942 ntBASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
CLIP4Q8N3C7 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 RNU6-792P-201ENST00000363490 107 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 RNA5SP30-201ENST00000365552 115 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC007068.1-201ENST00000396690 844 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 CTSL3P-202ENST00000412179 788 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 RAB9AP4-201ENST00000415230 609 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC106883.1-201ENST00000418805 562 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AK4P4-201ENST00000419465 646 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 MTCO1P45-201ENST00000431457 267 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 HMGB3P24-201ENST00000433260 622 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC004854.1-201ENST00000440356 349 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC006326.1-201ENST00000445465 787 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AL596266.1-201ENST00000448132 400 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 RPL31P20-201ENST00000449593 360 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 CBX1P2-201ENST00000453841 458 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC068587.2-201ENST00000478386 781 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 NPM1P17-201ENST00000479221 602 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 RN7SL170P-201ENST00000487098 295 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC069304.1-201ENST00000491593 704 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC103833.1-201ENST00000517442 172 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 OR7E13P-201ENST00000526052 910 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AL049838.1-201ENST00000563647 981 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 DPPA2P4-201ENST00000563717 878 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 MIR4472-2-201ENST00000582069 67 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 HMGB1P51-201ENST00000605166 638 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AL121652.1-201ENST00000608851 448 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 MIR7109-201ENST00000613748 65 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC004477.3-201ENST00000614061 590 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC129778.1-202ENST00000623812 261 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AL591379.1-207ENST00000635982 261 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 MRE11P1-201ENST00000464884 2127 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 Z83820.1-201ENST00000456978 1499 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AL645568.2-201ENST00000432815 1337 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 AC026523.2-201ENST00000625039 7739 ntBASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CLIP4Q8N3C7 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 NEPNP-201ENST00000404786 1371 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 SNORA64.1-201ENST00000362600 132 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 RNA5SP433-201ENST00000364491 114 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 147.6 ms