Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 MIR7853-201ENST00000584820 132 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 GMFG-212ENST00000602185 423 ntTSL 3 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 AC108738.1-201ENST00000603703 237 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 AC026367.3-201ENST00000619032 590 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 AC243960.7-201ENST00000623532 707 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 AL049767.1-202ENST00000637826 242 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SKA3Q8IX90 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
SKA3Q8IX90 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SKA3Q8IX90 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SKA3Q8IX90 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
SKA3Q8IX90 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SKA3Q8IX90 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SKA3Q8IX90 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 RNU1-146P-201ENST00000364015 165 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 MIR143-201ENST00000385300 106 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 DBIP1-201ENST00000401435 260 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 OR4K12P-201ENST00000406538 961 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 OR3A2-201ENST00000408891 1076 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 PPP2R2DP1-201ENST00000420526 637 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 CYCSP12-201ENST00000437729 300 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 AL035090.1-201ENST00000454835 332 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 IGBP1P4-201ENST00000503202 879 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC106872.4-201ENST00000510050 523 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 HMGN1P9-201ENST00000515212 298 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC025423.2-201ENST00000537570 439 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC005341.1-201ENST00000571086 708 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 RBM22P1-201ENST00000578589 1214 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 VN1R81P-201ENST00000602085 372 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC079395.2-201ENST00000610982 737 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC010632.3-201ENST00000611377 369 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC244107.2-201ENST00000611773 76 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 MIR4302-201ENST00000638058 60 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC004817.4-201ENST00000602396 3625 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC007996.1-201ENST00000620414 2821 ntBASIC4.72□□□□□ -1.65
SKA3Q8IX90 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SKA3Q8IX90 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.72□□□□□ -1.65
SKA3Q8IX90 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SKA3Q8IX90 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.65
SKA3Q8IX90 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.65
SKA3Q8IX90 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
SKA3Q8IX90 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SKA3Q8IX90 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
SKA3Q8IX90 AL731532.2-201ENST00000623542 1953 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SKA3Q8IX90 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SKA3Q8IX90 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 BTBD10P1-201ENST00000549824 1352 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 MTCO1P22-201ENST00000604619 1360 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 SSX3-202ENST00000376893 800 ntTSL 2 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms